Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 KRT18P23-201ENST00000435622 1283 ntBASIC19.11■□□□□ 0.65
CHFRQ96EP1 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 AC104390.1-201ENST00000555663 520 ntBASIC19.11■□□□□ 0.65
CHFRQ96EP1 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CHFRQ96EP1 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHFRQ96EP1 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.1■□□□□ 0.65
CHFRQ96EP1 HOXB1-202ENST00000577092 1414 ntBASIC19.1■□□□□ 0.65
CHFRQ96EP1 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 DRAXINP1-201ENST00000437611 948 ntBASIC19.1■□□□□ 0.65
CHFRQ96EP1 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 AC010240.3-201ENST00000607688 395 ntBASIC19.1■□□□□ 0.65
CHFRQ96EP1 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CHFRQ96EP1 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHFRQ96EP1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 PVRIG2P-201ENST00000435460 978 ntBASIC19.09■□□□□ 0.65
CHFRQ96EP1 NUS1P1-201ENST00000446295 882 ntBASIC19.09■□□□□ 0.65
CHFRQ96EP1 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHFRQ96EP1 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.09■□□□□ 0.65
CHFRQ96EP1 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHFRQ96EP1 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHFRQ96EP1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
CHFRQ96EP1 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.65
CHFRQ96EP1 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.08■□□□□ 0.65
CHFRQ96EP1 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHFRQ96EP1 KRT18P1-202ENST00000452408 1331 ntBASIC19.08■□□□□ 0.65
CHFRQ96EP1 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHFRQ96EP1 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHFRQ96EP1 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 AL732292.2-201ENST00000609649 430 ntBASIC19.08■□□□□ 0.64
CHFRQ96EP1 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms