Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 HIST1H2APS4-201ENST00000362070 348 ntBASIC22.67■■□□□ 1.22
VPS53Q5VIR6 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC22.67■■□□□ 1.22
VPS53Q5VIR6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
VPS53Q5VIR6 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC22.67■■□□□ 1.22
VPS53Q5VIR6 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC22.67■■□□□ 1.22
VPS53Q5VIR6 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
VPS53Q5VIR6 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
VPS53Q5VIR6 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
VPS53Q5VIR6 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
VPS53Q5VIR6 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 AC211429.1-201ENST00000415277 523 ntBASIC22.66■■□□□ 1.22
VPS53Q5VIR6 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 AC012306.2-201ENST00000609350 630 ntBASIC22.66■■□□□ 1.22
VPS53Q5VIR6 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS53Q5VIR6 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 AC093525.10-201ENST00000625130 1569 ntBASIC22.65■■□□□ 1.22
VPS53Q5VIR6 TSPY14P-201ENST00000303979 915 ntBASIC22.65■■□□□ 1.22
VPS53Q5VIR6 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 NAPSB-206ENST00000562112 1266 ntBASIC22.65■■□□□ 1.22
VPS53Q5VIR6 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 MIR4674-201ENST00000582457 87 ntBASIC22.65■■□□□ 1.22
VPS53Q5VIR6 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 AC133561.5-201ENST00000635547 218 ntBASIC22.65■■□□□ 1.22
VPS53Q5VIR6 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS53Q5VIR6 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
VPS53Q5VIR6 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22.64■■□□□ 1.22
VPS53Q5VIR6 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
VPS53Q5VIR6 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
VPS53Q5VIR6 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC22.64■■□□□ 1.22
VPS53Q5VIR6 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC22.64■■□□□ 1.21
VPS53Q5VIR6 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 AL031598.1-201ENST00000561511 1773 ntBASIC22.63■■□□□ 1.21
VPS53Q5VIR6 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 ARL16-209ENST00000573715 763 ntTSL 3 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 ARL16-211ENST00000576135 694 ntTSL 3 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC22.63■■□□□ 1.21
VPS53Q5VIR6 KRT8P3-201ENST00000519669 1449 ntBASIC22.63■■□□□ 1.21
VPS53Q5VIR6 AC092338.2-201ENST00000568827 1415 ntBASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms