Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.04■□□□□ 0.48
COL28A1Q2UY09 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 FAM220CP-201ENST00000395253 831 ntBASIC18.04■□□□□ 0.48
COL28A1Q2UY09 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 AC092865.5-201ENST00000545435 363 ntBASIC18.04■□□□□ 0.48
COL28A1Q2UY09 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 AP002414.4-201ENST00000589764 1148 ntBASIC18.04■□□□□ 0.48
COL28A1Q2UY09 LINC01711-201ENST00000598340 967 ntBASIC18.04■□□□□ 0.48
COL28A1Q2UY09 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL28A1Q2UY09 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 HBZP1-201ENST00000354915 429 ntBASIC18.03■□□□□ 0.48
COL28A1Q2UY09 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 MRPL3P1-201ENST00000400109 1033 ntBASIC18.03■□□□□ 0.48
COL28A1Q2UY09 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 AL590627.1-203ENST00000421194 1026 ntBASIC18.03■□□□□ 0.48
COL28A1Q2UY09 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 AC011498.5-201ENST00000592027 486 ntBASIC18.03■□□□□ 0.48
COL28A1Q2UY09 BX640515.1-201ENST00000617215 977 ntBASIC18.03■□□□□ 0.48
COL28A1Q2UY09 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
COL28A1Q2UY09 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 HMGN1P19-201ENST00000436976 333 ntBASIC18.02■□□□□ 0.48
COL28A1Q2UY09 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 AL121772.3-201ENST00000610840 674 ntBASIC18.02■□□□□ 0.48
COL28A1Q2UY09 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.02■□□□□ 0.48
COL28A1Q2UY09 AF228730.7-201ENST00000641842 219 ntBASIC18.02■□□□□ 0.48
COL28A1Q2UY09 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.02■□□□□ 0.47
COL28A1Q2UY09 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.02■□□□□ 0.47
COL28A1Q2UY09 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL28A1Q2UY09 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.02■□□□□ 0.47
COL28A1Q2UY09 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL28A1Q2UY09 BX323043.1-201ENST00000641006 1765 ntBASIC18.02■□□□□ 0.47
COL28A1Q2UY09 TMEM179-206ENST00000616017 1645 ntBASIC18.01■□□□□ 0.47
COL28A1Q2UY09 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 AC009237.14-201ENST00000609975 1594 ntBASIC18.01■□□□□ 0.47
COL28A1Q2UY09 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 NEK4P2-201ENST00000580004 1012 ntBASIC18.01■□□□□ 0.47
COL28A1Q2UY09 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms