Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RAPGEF3O95398 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RAPGEF3O95398 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
RAPGEF3O95398 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
RAPGEF3O95398 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
RAPGEF3O95398 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
RAPGEF3O95398 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC28.15■■■□□ 2.1
RAPGEF3O95398 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RAPGEF3O95398 AL512353.2-201ENST00000448759 1962 ntBASIC28.15■■■□□ 2.1
RAPGEF3O95398 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
RAPGEF3O95398 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RAPGEF3O95398 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC28.15■■■□□ 2.1
RAPGEF3O95398 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RAPGEF3O95398 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC28.15■■■□□ 2.1
RAPGEF3O95398 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC28.15■■■□□ 2.1
RAPGEF3O95398 DDT-203ENST00000403754 569 ntTSL 3 BASIC28.15■■■□□ 2.1
RAPGEF3O95398 AC004967.1-201ENST00000453589 447 ntBASIC28.15■■■□□ 2.1
RAPGEF3O95398 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RAPGEF3O95398 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
RAPGEF3O95398 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
RAPGEF3O95398 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RAPGEF3O95398 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RAPGEF3O95398 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC28.15■■■□□ 2.1
RAPGEF3O95398 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC28.14■■■□□ 2.1
RAPGEF3O95398 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
RAPGEF3O95398 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
RAPGEF3O95398 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RAPGEF3O95398 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RAPGEF3O95398 THAP5-204ENST00000438865 868 ntTSL 2 BASIC28.14■■■□□ 2.1
RAPGEF3O95398 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
RAPGEF3O95398 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC28.14■■■□□ 2.1
RAPGEF3O95398 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
RAPGEF3O95398 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC28.14■■■□□ 2.1
RAPGEF3O95398 AC134684.3-201ENST00000641758 218 ntBASIC28.14■■■□□ 2.1
RAPGEF3O95398 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
RAPGEF3O95398 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
RAPGEF3O95398 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.09
RAPGEF3O95398 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC28.14■■■□□ 2.09
RAPGEF3O95398 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RAPGEF3O95398 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RAPGEF3O95398 ENSA-205ENST00000361532 792 ntTSL 2 BASIC28.13■■■□□ 2.09
RAPGEF3O95398 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
RAPGEF3O95398 RCN1P2-201ENST00000398357 915 ntBASIC28.13■■■□□ 2.09
RAPGEF3O95398 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
RAPGEF3O95398 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC28.13■■■□□ 2.09
RAPGEF3O95398 MTDHP3-201ENST00000594186 672 ntBASIC28.13■■■□□ 2.09
RAPGEF3O95398 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC28.13■■■□□ 2.09
RAPGEF3O95398 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
RAPGEF3O95398 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RAPGEF3O95398 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
RAPGEF3O95398 CFL1-212ENST00000531413 636 ntTSL 3 BASIC28.12■■■□□ 2.09
RAPGEF3O95398 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC28.12■■■□□ 2.09
RAPGEF3O95398 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC28.12■■■□□ 2.09
RAPGEF3O95398 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RAPGEF3O95398 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RAPGEF3O95398 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RAPGEF3O95398 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RAPGEF3O95398 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 MED16-201ENST00000269814 1199 ntTSL 5 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 MIR3180-4-201ENST00000582223 153 ntBASIC28.11■■■□□ 2.09
RAPGEF3O95398 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 AP001269.4-201ENST00000609611 512 ntBASIC28.11■■■□□ 2.09
RAPGEF3O95398 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RAPGEF3O95398 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
RAPGEF3O95398 PAN3-AS1-201ENST00000563843 1351 ntBASIC28.11■■■□□ 2.09
RAPGEF3O95398 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RAPGEF3O95398 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RAPGEF3O95398 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
RAPGEF3O95398 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RAPGEF3O95398 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
RAPGEF3O95398 NAT14-202ENST00000587400 416 ntTSL 5 BASIC28.1■■■□□ 2.09
RAPGEF3O95398 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC28.1■■■□□ 2.09
RAPGEF3O95398 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC28.1■■■□□ 2.09
RAPGEF3O95398 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RAPGEF3O95398 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RAPGEF3O95398 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC28.1■■■□□ 2.09
RAPGEF3O95398 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
RAPGEF3O95398 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RAPGEF3O95398 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
RAPGEF3O95398 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RAPGEF3O95398 AL162377.1-201ENST00000618844 1793 ntBASIC28.09■■■□□ 2.09
RAPGEF3O95398 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
RAPGEF3O95398 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
RAPGEF3O95398 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC28.09■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms