Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.51■□□□□ 0.55
SNX3O60493 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SNX3O60493 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.51■□□□□ 0.55
SNX3O60493 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.51■□□□□ 0.55
SNX3O60493 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.51■□□□□ 0.55
SNX3O60493 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SNX3O60493 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.51■□□□□ 0.55
SNX3O60493 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.51■□□□□ 0.55
SNX3O60493 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SNX3O60493 REXO1L9P-201ENST00000604264 2108 ntBASIC18.51■□□□□ 0.55
SNX3O60493 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SNX3O60493 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
SNX3O60493 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.51■□□□□ 0.55
SNX3O60493 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SNX3O60493 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SNX3O60493 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX3O60493 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SNX3O60493 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SNX3O60493 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SNX3O60493 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.5■□□□□ 0.55
SNX3O60493 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.5■□□□□ 0.55
SNX3O60493 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SNX3O60493 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.5■□□□□ 0.55
SNX3O60493 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.5■□□□□ 0.55
SNX3O60493 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SNX3O60493 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SNX3O60493 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.5■□□□□ 0.55
SNX3O60493 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.5■□□□□ 0.55
SNX3O60493 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
SNX3O60493 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SNX3O60493 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SNX3O60493 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
SNX3O60493 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SNX3O60493 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SNX3O60493 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SNX3O60493 MTMR9LP-203ENST00000426597 1545 ntBASIC18.49■□□□□ 0.55
SNX3O60493 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SNX3O60493 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SNX3O60493 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.49■□□□□ 0.55
SNX3O60493 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.49■□□□□ 0.55
SNX3O60493 AC022211.2-201ENST00000585075 2527 ntBASIC18.49■□□□□ 0.55
SNX3O60493 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
SNX3O60493 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SNX3O60493 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.49■□□□□ 0.55
SNX3O60493 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.49■□□□□ 0.55
SNX3O60493 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.49■□□□□ 0.55
SNX3O60493 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.49■□□□□ 0.55
SNX3O60493 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.49■□□□□ 0.55
SNX3O60493 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.49■□□□□ 0.55
SNX3O60493 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SNX3O60493 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.49■□□□□ 0.55
SNX3O60493 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SNX3O60493 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.49■□□□□ 0.55
SNX3O60493 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SNX3O60493 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.48■□□□□ 0.55
SNX3O60493 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SNX3O60493 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SNX3O60493 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.48■□□□□ 0.55
SNX3O60493 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SNX3O60493 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SNX3O60493 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SNX3O60493 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SNX3O60493 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SNX3O60493 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SNX3O60493 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms