Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 MIR4503-201ENST00000582187 83 ntBASIC-2.76□□□□□ -2.85
LIMS3P0CW19 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.77□□□□□ -2.85
LIMS3P0CW19 RNU6-574P-201ENST00000384265 107 ntBASIC-2.77□□□□□ -2.85
LIMS3P0CW19 Y_RNA.525-201ENST00000384570 113 ntBASIC-2.77□□□□□ -2.85
LIMS3P0CW19 Y_RNA.71-201ENST00000362892 104 ntBASIC-2.78□□□□□ -2.85
LIMS3P0CW19 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.78□□□□□ -2.85
LIMS3P0CW19 RNU7-61P-201ENST00000515897 61 ntBASIC-2.78□□□□□ -2.85
LIMS3P0CW19 MIR3139-201ENST00000579145 76 ntBASIC-2.78□□□□□ -2.85
LIMS3P0CW19 Y_RNA.282-201ENST00000364793 102 ntBASIC-2.79□□□□□ -2.86
LIMS3P0CW19 RNU6-1107P-201ENST00000364817 104 ntBASIC-2.79□□□□□ -2.86
LIMS3P0CW19 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.79□□□□□ -2.86
LIMS3P0CW19 RNU4-88P-201ENST00000411220 86 ntBASIC-2.79□□□□□ -2.86
LIMS3P0CW19 RNU6-196P-201ENST00000384315 107 ntBASIC-2.8□□□□□ -2.86
LIMS3P0CW19 MIR519C-201ENST00000385053 87 ntBASIC-2.8□□□□□ -2.86
LIMS3P0CW19 MTND5P41-201ENST00000517498 206 ntBASIC-2.8□□□□□ -2.86
LIMS3P0CW19 Y_RNA.109-201ENST00000363215 102 ntBASIC-2.81□□□□□ -2.86
LIMS3P0CW19 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.81□□□□□ -2.86
LIMS3P0CW19 RNU6-194P-201ENST00000363862 105 ntBASIC-2.82□□□□□ -2.86
LIMS3P0CW19 MIR520D-201ENST00000385002 87 ntBASIC-2.82□□□□□ -2.86
LIMS3P0CW19 RNU6-587P-201ENST00000391282 106 ntBASIC-2.82□□□□□ -2.86
LIMS3P0CW19 RNU6-257P-201ENST00000410238 98 ntBASIC-2.82□□□□□ -2.86
LIMS3P0CW19 RNU6-1108P-201ENST00000516308 104 ntBASIC-2.82□□□□□ -2.86
LIMS3P0CW19 AL353621.2-201ENST00000605340 133 ntBASIC-2.82□□□□□ -2.86
LIMS3P0CW19 Y_RNA.325-201ENST00000365171 122 ntBASIC-2.83□□□□□ -2.86
LIMS3P0CW19 Y_RNA.343-201ENST00000365354 112 ntBASIC-2.83□□□□□ -2.86
LIMS3P0CW19 Y_RNA.586-201ENST00000391146 98 ntBASIC-2.83□□□□□ -2.86
LIMS3P0CW19 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.83□□□□□ -2.86
LIMS3P0CW19 RNU6-1089P-201ENST00000516473 104 ntBASIC-2.83□□□□□ -2.86
LIMS3P0CW19 RNU6-327P-201ENST00000516270 127 ntBASIC-2.84□□□□□ -2.86
LIMS3P0CW19 RNU6-598P-201ENST00000364017 105 ntBASIC-2.85□□□□□ -2.87
LIMS3P0CW19 Y_RNA.107-201ENST00000363190 121 ntBASIC-2.86□□□□□ -2.87
LIMS3P0CW19 RNU6-698P-201ENST00000363523 107 ntBASIC-2.86□□□□□ -2.87
LIMS3P0CW19 SNORD115-37-201ENST00000363768 82 ntBASIC-2.86□□□□□ -2.87
LIMS3P0CW19 RNU6-34P-201ENST00000364874 107 ntBASIC-2.86□□□□□ -2.87
LIMS3P0CW19 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-2.86□□□□□ -2.87
LIMS3P0CW19 RNU6-1111P-201ENST00000391118 107 ntBASIC-2.86□□□□□ -2.87
LIMS3P0CW19 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-2.86□□□□□ -2.87
LIMS3P0CW19 MT-TM-201ENST00000387377 68 ntBASIC-2.87□□□□□ -2.87
LIMS3P0CW19 RNU6-162P-201ENST00000516228 103 ntBASIC-2.87□□□□□ -2.87
LIMS3P0CW19 RNU6-971P-201ENST00000516920 106 ntBASIC-2.87□□□□□ -2.87
LIMS3P0CW19 MIR3675-201ENST00000583661 73 ntBASIC-2.87□□□□□ -2.87
LIMS3P0CW19 U7.3-201ENST00000616123 62 ntBASIC-2.87□□□□□ -2.87
LIMS3P0CW19 AL117351.2-201ENST00000513571 157 ntBASIC-2.88□□□□□ -2.87
LIMS3P0CW19 AC120024.2-201ENST00000576526 175 ntBASIC-2.88□□□□□ -2.87
LIMS3P0CW19 RNU6-379P-201ENST00000363813 104 ntBASIC-2.89□□□□□ -2.87
LIMS3P0CW19 RNU6-563P-201ENST00000364872 108 ntBASIC-2.89□□□□□ -2.87
LIMS3P0CW19 MIR590-201ENST00000385008 97 ntBASIC-2.89□□□□□ -2.87
LIMS3P0CW19 MIR1302-5-201ENST00000408164 150 ntBASIC-2.89□□□□□ -2.87
LIMS3P0CW19 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-2.89□□□□□ -2.87
LIMS3P0CW19 Y_RNA.93-201ENST00000363066 109 ntBASIC-2.9□□□□□ -2.87
LIMS3P0CW19 SNORD116-21-201ENST00000384507 92 ntBASIC-2.9□□□□□ -2.87
LIMS3P0CW19 RNU6-258P-201ENST00000390884 101 ntBASIC-2.9□□□□□ -2.87
LIMS3P0CW19 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.9□□□□□ -2.87
LIMS3P0CW19 RNU6-659P-201ENST00000516454 104 ntBASIC-2.91□□□□□ -2.88
LIMS3P0CW19 AP001094.1-201ENST00000579805 193 ntBASIC-2.91□□□□□ -2.88
LIMS3P0CW19 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.92□□□□□ -2.88
LIMS3P0CW19 U2.18-201ENST00000622185 84 ntBASIC-2.92□□□□□ -2.88
LIMS3P0CW19 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.93□□□□□ -2.88
LIMS3P0CW19 MTATP8P2-201ENST00000435212 202 ntBASIC-2.93□□□□□ -2.88
LIMS3P0CW19 RNU6-1045P-201ENST00000516321 107 ntBASIC-2.93□□□□□ -2.88
LIMS3P0CW19 RNU6-182P-201ENST00000516970 105 ntBASIC-2.93□□□□□ -2.88
LIMS3P0CW19 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.93□□□□□ -2.88
LIMS3P0CW19 U4.4-201ENST00000620626 117 ntBASIC-2.93□□□□□ -2.88
LIMS3P0CW19 RNA5SP93-201ENST00000362525 114 ntBASIC-2.94□□□□□ -2.88
LIMS3P0CW19 MIR548AA1-201ENST00000384971 97 ntBASIC-2.94□□□□□ -2.88
LIMS3P0CW19 RNU6-604P-201ENST00000390917 100 ntBASIC-2.94□□□□□ -2.88
LIMS3P0CW19 Y_RNA.604-201ENST00000410574 102 ntBASIC-2.94□□□□□ -2.88
LIMS3P0CW19 RNU6-388P-201ENST00000517012 105 ntBASIC-2.94□□□□□ -2.88
LIMS3P0CW19 RNU6-389P-201ENST00000517048 105 ntBASIC-2.94□□□□□ -2.88
LIMS3P0CW19 RNU6-303P-201ENST00000517091 106 ntBASIC-2.94□□□□□ -2.88
LIMS3P0CW19 MIR3170-201ENST00000582699 77 ntBASIC-2.94□□□□□ -2.88
LIMS3P0CW19 Y_RNA.818-201ENST00000618813 71 ntBASIC-2.94□□□□□ -2.88
LIMS3P0CW19 RNU6-624P-201ENST00000363411 107 ntBASIC-2.95□□□□□ -2.88
LIMS3P0CW19 SNORA8.1-201ENST00000384250 140 ntBASIC-2.95□□□□□ -2.88
LIMS3P0CW19 RNU7-200P-201ENST00000516105 62 ntBASIC-2.95□□□□□ -2.88
LIMS3P0CW19 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.96□□□□□ -2.88
LIMS3P0CW19 RNY4P7-201ENST00000364600 96 ntBASIC-2.96□□□□□ -2.88
LIMS3P0CW19 RNU6-982P-201ENST00000516216 102 ntBASIC-2.96□□□□□ -2.88
LIMS3P0CW19 MIR548V-201ENST00000584165 80 ntBASIC-2.96□□□□□ -2.88
LIMS3P0CW19 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-2.96□□□□□ -2.88
LIMS3P0CW19 RNU6-886P-201ENST00000384319 105 ntBASIC-2.97□□□□□ -2.88
LIMS3P0CW19 MIR466-201ENST00000580653 84 ntBASIC-2.97□□□□□ -2.88
LIMS3P0CW19 RNU6-633P-201ENST00000362612 103 ntBASIC-2.98□□□□□ -2.89
LIMS3P0CW19 RNU6-247P-201ENST00000362636 107 ntBASIC-2.98□□□□□ -2.89
LIMS3P0CW19 RNU6-330P-201ENST00000363015 107 ntBASIC-2.98□□□□□ -2.89
LIMS3P0CW19 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.98□□□□□ -2.89
LIMS3P0CW19 MIR4748-201ENST00000578076 82 ntBASIC-2.98□□□□□ -2.89
LIMS3P0CW19 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.98□□□□□ -2.89
LIMS3P0CW19 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.98□□□□□ -2.89
LIMS3P0CW19 SNORD45.1-201ENST00000363181 77 ntBASIC-2.99□□□□□ -2.89
LIMS3P0CW19 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.99□□□□□ -2.89
LIMS3P0CW19 AC093729.1-201ENST00000513074 128 ntBASIC-2.99□□□□□ -2.89
LIMS3P0CW19 RNU6-463P-201ENST00000384340 107 ntBASIC-3□□□□□ -2.89
LIMS3P0CW19 MTND4LP1-201ENST00000446263 157 ntBASIC-3.01□□□□□ -2.89
LIMS3P0CW19 RNU6-557P-201ENST00000516842 110 ntBASIC-3.01□□□□□ -2.89
LIMS3P0CW19 SNORD116-16-201ENST00000384533 92 ntBASIC-3.02□□□□□ -2.89
LIMS3P0CW19 RNU6-109P-201ENST00000516364 107 ntBASIC-3.02□□□□□ -2.89
LIMS3P0CW19 RNU6-184P-201ENST00000516514 107 ntBASIC-3.02□□□□□ -2.89
LIMS3P0CW19 MIR548W-201ENST00000581970 74 ntBASIC-3.02□□□□□ -2.89
LIMS3P0CW19 RNA5SP215-201ENST00000363440 122 ntBASIC-3.03□□□□□ -2.89
Retrieved 100 of 98,524 protein–RNA pairs in 7 ms