Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 AL109659.2-201ENST00000606809 1674 ntBASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 AL121956.5-201ENST00000625261 221 ntBASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 KRT8P32-201ENST00000512863 1461 ntBASIC16.73■□□□□ 0.27
CLCF1Q9UBD9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 SPDYE15P-201ENST00000424157 909 ntBASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLCF1Q9UBD9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 AC112907.2-201ENST00000448639 330 ntBASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 AC091076.1-201ENST00000610741 619 ntBASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 AL358472.4-201ENST00000633140 710 ntBASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CLCF1Q9UBD9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CLCF1Q9UBD9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CLCF1Q9UBD9 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CLCF1Q9UBD9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms