Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
CNTN3Q9P232 BX323043.1-201ENST00000641006 1765 ntBASIC20.25■□□□□ 0.83
CNTN3Q9P232 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
CNTN3Q9P232 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
CNTN3Q9P232 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNTN3Q9P232 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNTN3Q9P232 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNTN3Q9P232 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNTN3Q9P232 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 MIR564-202ENST00000385049 94 ntBASIC20.24■□□□□ 0.83
CNTN3Q9P232 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNTN3Q9P232 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNTN3Q9P232 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNTN3Q9P232 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNTN3Q9P232 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CNTN3Q9P232 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNTN3Q9P232 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 AC018445.3-201ENST00000624177 1945 ntBASIC20.23■□□□□ 0.83
CNTN3Q9P232 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 SPDYE15P-201ENST00000424157 909 ntBASIC20.23■□□□□ 0.83
CNTN3Q9P232 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CNTN3Q9P232 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 AC024243.1-201ENST00000609234 778 ntBASIC20.23■□□□□ 0.83
CNTN3Q9P232 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.23■□□□□ 0.83
CNTN3Q9P232 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.22■□□□□ 0.83
CNTN3Q9P232 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.22■□□□□ 0.83
CNTN3Q9P232 SEC1P-202ENST00000473944 940 ntBASIC20.22■□□□□ 0.83
CNTN3Q9P232 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 AC112497.1-201ENST00000624824 639 ntBASIC20.22■□□□□ 0.83
CNTN3Q9P232 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.22■□□□□ 0.83
CNTN3Q9P232 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNTN3Q9P232 AL049812.1-201ENST00000432563 2267 ntBASIC20.22■□□□□ 0.83
CNTN3Q9P232 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms