Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 RCC2P3-201ENST00000418112 1537 ntBASIC18.85■□□□□ 0.61
HMGB4Q8WW32 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 KRT18P1-202ENST00000452408 1331 ntBASIC18.85■□□□□ 0.61
HMGB4Q8WW32 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 TSPY22P-201ENST00000427496 604 ntBASIC18.85■□□□□ 0.61
HMGB4Q8WW32 CHCHD2P8-201ENST00000429873 447 ntBASIC18.85■□□□□ 0.61
HMGB4Q8WW32 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HMGB4Q8WW32 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 AC004870.1-201ENST00000315132 882 ntBASIC18.84■□□□□ 0.61
HMGB4Q8WW32 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 KRT18P23-201ENST00000435622 1283 ntBASIC18.84■□□□□ 0.61
HMGB4Q8WW32 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HMGB4Q8WW32 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.83■□□□□ 0.61
HMGB4Q8WW32 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB4Q8WW32 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
HMGB4Q8WW32 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB4Q8WW32 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB4Q8WW32 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB4Q8WW32 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB4Q8WW32 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
HMGB4Q8WW32 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 AC008556.1-201ENST00000610908 2040 ntBASIC18.83■□□□□ 0.6
HMGB4Q8WW32 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB4Q8WW32 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 MIR662-201ENST00000384847 95 ntBASIC18.82■□□□□ 0.6
HMGB4Q8WW32 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.82■□□□□ 0.6
HMGB4Q8WW32 UNC93B7-201ENST00000509439 705 ntBASIC18.82■□□□□ 0.6
HMGB4Q8WW32 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms