Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VCANP13611 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.46■□□□□ 0.71
VCANP13611 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
VCANP13611 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
VCANP13611 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VCANP13611 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VCANP13611 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.46■□□□□ 0.71
VCANP13611 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
VCANP13611 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
VCANP13611 GAPDHP21-201ENST00000450301 1010 ntBASIC19.46■□□□□ 0.71
VCANP13611 AC022494.1-201ENST00000466044 728 ntBASIC19.46■□□□□ 0.71
VCANP13611 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.46■□□□□ 0.71
VCANP13611 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.46■□□□□ 0.71
VCANP13611 AL606495.2-201ENST00000605867 535 ntBASIC19.46■□□□□ 0.71
VCANP13611 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
VCANP13611 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VCANP13611 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.45■□□□□ 0.7
VCANP13611 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.45■□□□□ 0.7
VCANP13611 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VCANP13611 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.45■□□□□ 0.7
VCANP13611 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.45■□□□□ 0.7
VCANP13611 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.45■□□□□ 0.7
VCANP13611 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VCANP13611 AC007375.3-201ENST00000600936 2314 ntBASIC19.45■□□□□ 0.7
VCANP13611 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VCANP13611 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VCANP13611 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
VCANP13611 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.45■□□□□ 0.7
VCANP13611 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.45■□□□□ 0.7
VCANP13611 AC093028.1-201ENST00000622998 982 ntBASIC19.45■□□□□ 0.7
VCANP13611 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VCANP13611 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VCANP13611 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.44■□□□□ 0.7
VCANP13611 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VCANP13611 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.44■□□□□ 0.7
VCANP13611 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.44■□□□□ 0.7
VCANP13611 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.44■□□□□ 0.7
VCANP13611 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
VCANP13611 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
VCANP13611 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 AC244015.2-201ENST00000616358 1861 ntBASIC19.44■□□□□ 0.7
VCANP13611 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VCANP13611 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
VCANP13611 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.44■□□□□ 0.7
VCANP13611 MIR5100-201ENST00000579544 119 ntBASIC19.44■□□□□ 0.7
VCANP13611 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.44■□□□□ 0.7
VCANP13611 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VCANP13611 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.43■□□□□ 0.7
VCANP13611 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.43■□□□□ 0.7
VCANP13611 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 AC023274.1-201ENST00000418278 595 ntBASIC19.43■□□□□ 0.7
VCANP13611 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.43■□□□□ 0.7
VCANP13611 AL008721.1-201ENST00000609964 604 ntBASIC19.43■□□□□ 0.7
VCANP13611 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.43■□□□□ 0.7
VCANP13611 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.43■□□□□ 0.7
VCANP13611 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VCANP13611 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
VCANP13611 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.43■□□□□ 0.7
VCANP13611 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.43■□□□□ 0.7
VCANP13611 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VCANP13611 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.43■□□□□ 0.7
VCANP13611 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.42■□□□□ 0.7
VCANP13611 ALG1L5P-201ENST00000482043 771 ntBASIC19.42■□□□□ 0.7
VCANP13611 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.42■□□□□ 0.7
VCANP13611 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.42■□□□□ 0.7
VCANP13611 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms