Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.84■□□□□ 0.93
MMP3P08254 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.84■□□□□ 0.93
MMP3P08254 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.84■□□□□ 0.93
MMP3P08254 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.84■□□□□ 0.93
MMP3P08254 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
MMP3P08254 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.84■□□□□ 0.93
MMP3P08254 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
MMP3P08254 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
MMP3P08254 AC141586.3-201ENST00000562166 1838 ntBASIC20.84■□□□□ 0.93
MMP3P08254 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.84■□□□□ 0.93
MMP3P08254 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.84■□□□□ 0.93
MMP3P08254 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.84■□□□□ 0.93
MMP3P08254 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
MMP3P08254 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.84■□□□□ 0.93
MMP3P08254 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.84■□□□□ 0.93
MMP3P08254 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.84■□□□□ 0.93
MMP3P08254 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
MMP3P08254 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
MMP3P08254 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MMP3P08254 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.84■□□□□ 0.93
MMP3P08254 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MMP3P08254 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
MMP3P08254 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MMP3P08254 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MMP3P08254 FP475955.4-201ENST00000623131 1990 ntBASIC20.83■□□□□ 0.93
MMP3P08254 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
MMP3P08254 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.83■□□□□ 0.93
MMP3P08254 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MMP3P08254 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.83■□□□□ 0.93
MMP3P08254 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MMP3P08254 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MMP3P08254 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.83■□□□□ 0.93
MMP3P08254 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.83■□□□□ 0.93
MMP3P08254 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.83■□□□□ 0.93
MMP3P08254 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
MMP3P08254 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.83■□□□□ 0.93
MMP3P08254 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.83■□□□□ 0.93
MMP3P08254 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MMP3P08254 AL158211.5-201ENST00000623583 2518 ntBASIC20.83■□□□□ 0.92
MMP3P08254 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.83■□□□□ 0.92
MMP3P08254 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.83■□□□□ 0.92
MMP3P08254 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MMP3P08254 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
MMP3P08254 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
MMP3P08254 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.83■□□□□ 0.92
MMP3P08254 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
MMP3P08254 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MMP3P08254 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MMP3P08254 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.83■□□□□ 0.92
MMP3P08254 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
MMP3P08254 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 AC034236.2-201ENST00000606662 1610 ntBASIC20.82■□□□□ 0.92
MMP3P08254 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.82■□□□□ 0.92
MMP3P08254 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
MMP3P08254 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.82■□□□□ 0.92
MMP3P08254 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
MMP3P08254 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.82■□□□□ 0.92
MMP3P08254 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.82■□□□□ 0.92
MMP3P08254 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.82■□□□□ 0.92
MMP3P08254 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
MMP3P08254 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.82■□□□□ 0.92
MMP3P08254 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP3P08254 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.82■□□□□ 0.92
MMP3P08254 AC006333.2-201ENST00000607957 2099 ntBASIC20.82■□□□□ 0.92
MMP3P08254 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
MMP3P08254 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
MMP3P08254 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.81■□□□□ 0.92
MMP3P08254 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 KRT18P1-202ENST00000452408 1331 ntBASIC20.81■□□□□ 0.92
MMP3P08254 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
MMP3P08254 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MMP3P08254 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms