Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SDC3O75056 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 KRT8P3-201ENST00000519669 1449 ntBASIC18.39■□□□□ 0.53
SDC3O75056 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.38■□□□□ 0.53
SDC3O75056 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SDC3O75056 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.38■□□□□ 0.53
SDC3O75056 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
SDC3O75056 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.38■□□□□ 0.53
SDC3O75056 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 BX276092.5-203ENST00000456199 560 ntBASIC18.38■□□□□ 0.53
SDC3O75056 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 PRELID1P1-202ENST00000567272 903 ntBASIC18.38■□□□□ 0.53
SDC3O75056 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.38■□□□□ 0.53
SDC3O75056 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.38■□□□□ 0.53
SDC3O75056 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.38■□□□□ 0.53
SDC3O75056 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.38■□□□□ 0.53
SDC3O75056 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SDC3O75056 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.38■□□□□ 0.53
SDC3O75056 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.38■□□□□ 0.53
SDC3O75056 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SDC3O75056 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.38■□□□□ 0.53
SDC3O75056 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SDC3O75056 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SDC3O75056 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDC3O75056 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.37■□□□□ 0.53
SDC3O75056 AC007952.6-201ENST00000573168 2673 ntBASIC18.37■□□□□ 0.53
SDC3O75056 AC003957.1-201ENST00000625108 2673 ntBASIC18.37■□□□□ 0.53
SDC3O75056 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.37■□□□□ 0.53
SDC3O75056 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.37■□□□□ 0.53
SDC3O75056 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SDC3O75056 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.37■□□□□ 0.53
SDC3O75056 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SDC3O75056 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.37■□□□□ 0.53
SDC3O75056 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.37■□□□□ 0.53
SDC3O75056 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.37■□□□□ 0.53
SDC3O75056 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC3O75056 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC3O75056 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC3O75056 MIR3652-201ENST00000579335 131 ntBASIC18.37■□□□□ 0.53
SDC3O75056 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.37■□□□□ 0.53
SDC3O75056 AL121672.3-201ENST00000608644 468 ntBASIC18.37■□□□□ 0.53
SDC3O75056 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SDC3O75056 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC3O75056 RCC2P3-201ENST00000418112 1537 ntBASIC18.37■□□□□ 0.53
SDC3O75056 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.37■□□□□ 0.53
SDC3O75056 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC3O75056 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.37■□□□□ 0.53
SDC3O75056 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC3O75056 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC3O75056 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
SDC3O75056 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SDC3O75056 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC3O75056 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC3O75056 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC3O75056 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
SDC3O75056 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC3O75056 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC3O75056 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC3O75056 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.36■□□□□ 0.53
SDC3O75056 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.36■□□□□ 0.53
SDC3O75056 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SDC3O75056 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.36■□□□□ 0.53
SDC3O75056 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.36■□□□□ 0.53
SDC3O75056 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.36■□□□□ 0.53
SDC3O75056 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.36■□□□□ 0.53
SDC3O75056 AL162741.1-201ENST00000565563 1558 ntBASIC18.36■□□□□ 0.53
SDC3O75056 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC3O75056 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.36■□□□□ 0.53
SDC3O75056 AC016734.2-201ENST00000624325 1377 ntBASIC18.36■□□□□ 0.53
SDC3O75056 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC3O75056 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC3O75056 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms