Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC32.2■■■□□ 2.75
CUX2O14529 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
CUX2O14529 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
CUX2O14529 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
CUX2O14529 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CUX2O14529 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
CUX2O14529 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC32.19■■■□□ 2.74
CUX2O14529 RBM7-207ENST00000544582 692 ntTSL 3 BASIC32.19■■■□□ 2.74
CUX2O14529 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC32.19■■■□□ 2.74
CUX2O14529 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC32.19■■■□□ 2.74
CUX2O14529 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC32.19■■■□□ 2.74
CUX2O14529 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CUX2O14529 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC32.19■■■□□ 2.74
CUX2O14529 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CUX2O14529 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC32.19■■■□□ 2.74
CUX2O14529 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX2O14529 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX2O14529 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX2O14529 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC32.18■■■□□ 2.74
CUX2O14529 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX2O14529 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC32.18■■■□□ 2.74
CUX2O14529 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC32.18■■■□□ 2.74
CUX2O14529 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC32.18■■■□□ 2.74
CUX2O14529 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX2O14529 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX2O14529 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC32.18■■■□□ 2.74
CUX2O14529 PAM16-208ENST00000573553 722 ntTSL 2 BASIC32.18■■■□□ 2.74
CUX2O14529 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC32.18■■■□□ 2.74
CUX2O14529 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CUX2O14529 AC106028.4-201ENST00000614509 607 ntBASIC32.18■■■□□ 2.74
CUX2O14529 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC32.18■■■□□ 2.74
CUX2O14529 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CUX2O14529 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC32.18■■■□□ 2.74
CUX2O14529 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CUX2O14529 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC32.17■■■□□ 2.74
CUX2O14529 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC32.17■■■□□ 2.74
CUX2O14529 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC32.17■■■□□ 2.74
CUX2O14529 IGHGP-201ENST00000390555 1178 ntBASIC32.17■■■□□ 2.74
CUX2O14529 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC32.17■■■□□ 2.74
CUX2O14529 TEN1-204ENST00000588202 862 ntTSL 3 BASIC32.17■■■□□ 2.74
CUX2O14529 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CUX2O14529 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CUX2O14529 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CUX2O14529 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC32.17■■■□□ 2.74
CUX2O14529 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CUX2O14529 COPE-202ENST00000349893 948 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC32.16■■■□□ 2.74
CUX2O14529 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC32.16■■■□□ 2.74
CUX2O14529 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CUX2O14529 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 PAN3-AS1-201ENST00000563843 1351 ntBASIC32.16■■■□□ 2.74
CUX2O14529 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 AC009533.2-201ENST00000543664 586 ntBASIC32.16■■■□□ 2.74
CUX2O14529 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC32.16■■■□□ 2.74
CUX2O14529 AP002472.1-201ENST00000577490 586 ntBASIC32.16■■■□□ 2.74
CUX2O14529 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CUX2O14529 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC32.16■■■□□ 2.74
CUX2O14529 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC32.15■■■□□ 2.74
CUX2O14529 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC32.15■■■□□ 2.74
CUX2O14529 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC32.15■■■□□ 2.74
CUX2O14529 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
CUX2O14529 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC32.15■■■□□ 2.74
CUX2O14529 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC32.15■■■□□ 2.74
CUX2O14529 AC096582.2-201ENST00000510860 516 ntBASIC32.15■■■□□ 2.74
CUX2O14529 CFL1-202ENST00000524553 860 ntTSL 2 BASIC32.15■■■□□ 2.74
CUX2O14529 SNHG9-202ENST00000564014 471 ntBASIC32.15■■■□□ 2.74
CUX2O14529 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
CUX2O14529 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC32.15■■■□□ 2.74
CUX2O14529 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC32.15■■■□□ 2.74
CUX2O14529 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
CUX2O14529 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC32.14■■■□□ 2.74
CUX2O14529 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CUX2O14529 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC32.14■■■□□ 2.74
CUX2O14529 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC32.14■■■□□ 2.74
CUX2O14529 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CUX2O14529 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
CUX2O14529 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC32.14■■■□□ 2.74
CUX2O14529 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC32.14■■■□□ 2.74
CUX2O14529 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC32.14■■■□□ 2.74
CUX2O14529 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC32.14■■■□□ 2.74
CUX2O14529 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC32.14■■■□□ 2.74
CUX2O14529 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
CUX2O14529 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.73
CUX2O14529 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC32.13■■■□□ 2.73
CUX2O14529 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC32.13■■■□□ 2.73
CUX2O14529 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC32.13■■■□□ 2.73
CUX2O14529 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CUX2O14529 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC32.13■■■□□ 2.73
CUX2O14529 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CUX2O14529 HLA-V-201ENST00000429037 534 ntBASIC32.13■■■□□ 2.73
CUX2O14529 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
CUX2O14529 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
CUX2O14529 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CUX2O14529 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC32.12■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms