Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 MEIS3P1-201ENST00000495167 958 ntBASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 AC005498.2-205ENST00000593218 784 ntBASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC85CA6NKD9 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 CCDC74BP1-201ENST00000508880 1123 ntBASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 AL606495.2-201ENST00000605867 535 ntBASIC20.83■□□□□ 0.93
CCDC85CA6NKD9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC85CA6NKD9 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC85CA6NKD9 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC85CA6NKD9 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC85CA6NKD9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC85CA6NKD9 TP73-AS1-210ENST00000637775 1455 ntBASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 OR8S1-201ENST00000310194 1080 ntBASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 MRPL20P1-201ENST00000400819 433 ntBASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 KRT18P2-201ENST00000447938 1258 ntBASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 AC084346.2-201ENST00000607097 949 ntBASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 MIR6752-201ENST00000618442 71 ntBASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC85CA6NKD9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 SIGLEC30P-201ENST00000455569 941 ntBASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 AC104390.1-201ENST00000555663 520 ntBASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 AC025062.2-201ENST00000605477 670 ntBASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 AL078644.1-201ENST00000609881 752 ntBASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CCDC85CA6NKD9 AC097374.2-201ENST00000618617 1306 ntBASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 AL139400.1-201ENST00000366220 510 ntBASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 ELL2P1-201ENST00000413990 1906 ntBASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC85CA6NKD9 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 AP005117.1-201ENST00000584346 1413 ntBASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms