Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 FICD-205ENST00000552758 603 ntTSL 2 BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 IGHV3OR16-7-201ENST00000604106 360 ntBASIC32.61■■■□□ 2.81
CCDC88BA6NC98 REXO1L6P-202ENST00000619970 1078 ntBASIC32.61■■■□□ 2.81
CCDC88BA6NC98 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 IRX1P1-201ENST00000438849 1838 ntBASIC32.61■■■□□ 2.81
CCDC88BA6NC98 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC32.61■■■□□ 2.81
CCDC88BA6NC98 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 NSUN5P1-202ENST00000421140 1535 ntBASIC32.6■■■□□ 2.81
CCDC88BA6NC98 NSUN5P2-203ENST00000457352 1529 ntBASIC32.6■■■□□ 2.81
CCDC88BA6NC98 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC32.6■■■□□ 2.81
CCDC88BA6NC98 AC068587.9-201ENST00000641814 219 ntBASIC32.6■■■□□ 2.81
CCDC88BA6NC98 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 Z69720.1-201ENST00000601483 472 ntBASIC32.59■■■□□ 2.81
CCDC88BA6NC98 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 CYP51A1P1-201ENST00000492267 1507 ntBASIC32.59■■■□□ 2.81
CCDC88BA6NC98 UBQLN4P1-201ENST00000461599 1801 ntBASIC32.59■■■□□ 2.81
CCDC88BA6NC98 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CCDC88BA6NC98 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 AL662844.1-201ENST00000546340 181 ntBASIC32.58■■■□□ 2.81
CCDC88BA6NC98 AC006538.3-201ENST00000612495 578 ntBASIC32.58■■■□□ 2.81
CCDC88BA6NC98 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 FEM1AP3-201ENST00000403722 1741 ntBASIC32.58■■■□□ 2.81
CCDC88BA6NC98 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88BA6NC98 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC32.57■■■□□ 2.81
CCDC88BA6NC98 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC32.57■■■□□ 2.8
CCDC88BA6NC98 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC32.57■■■□□ 2.8
CCDC88BA6NC98 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC32.57■■■□□ 2.8
CCDC88BA6NC98 SAPCD2P3-201ENST00000455031 850 ntBASIC32.57■■■□□ 2.8
CCDC88BA6NC98 CALM1-205ENST00000553542 877 ntTSL 5 BASIC32.57■■■□□ 2.8
CCDC88BA6NC98 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
CCDC88BA6NC98 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
CCDC88BA6NC98 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC32.57■■■□□ 2.8
CCDC88BA6NC98 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC32.57■■■□□ 2.8
CCDC88BA6NC98 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC32.56■■■□□ 2.8
CCDC88BA6NC98 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 DFFB-203ENST00000341385 572 ntTSL 5 BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 AF238378.1-201ENST00000526806 358 ntBASIC32.55■■■□□ 2.8
CCDC88BA6NC98 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC32.55■■■□□ 2.8
CCDC88BA6NC98 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC32.55■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms