Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU4-63P-201ENST00000411313 118 ntBASIC-0.58□□□□□ -2.5
CDX1P47902 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.58□□□□□ -2.5
CDX1P47902 SNORD2-201ENST00000459163 69 ntBASIC-0.58□□□□□ -2.5
CDX1P47902 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.58□□□□□ -2.5
CDX1P47902 RNU6-795P-201ENST00000516323 103 ntBASIC-0.58□□□□□ -2.5
CDX1P47902 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.59□□□□□ -2.5
CDX1P47902 RNU6-746P-201ENST00000384112 109 ntBASIC-0.59□□□□□ -2.5
CDX1P47902 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.59□□□□□ -2.5
CDX1P47902 RNU6-519P-201ENST00000410590 108 ntBASIC-0.59□□□□□ -2.5
CDX1P47902 MIR548AX-201ENST00000580117 73 ntBASIC-0.59□□□□□ -2.5
CDX1P47902 MIR9-2-201ENST00000384838 87 ntBASIC-0.6□□□□□ -2.51
CDX1P47902 AL445193.1-201ENST00000441183 141 ntBASIC-0.6□□□□□ -2.51
CDX1P47902 MIR4777-201ENST00000583710 86 ntBASIC-0.6□□□□□ -2.51
CDX1P47902 MIR548Z-201ENST00000584743 97 ntBASIC-0.6□□□□□ -2.51
CDX1P47902 RNU6-132P-201ENST00000383863 107 ntBASIC-0.61□□□□□ -2.51
CDX1P47902 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.61□□□□□ -2.51
CDX1P47902 SNORD4B-201ENST00000459083 72 ntBASIC-0.61□□□□□ -2.51
CDX1P47902 AC012531.4-201ENST00000616509 177 ntBASIC-0.61□□□□□ -2.51
CDX1P47902 SNORD115-25-201ENST00000362619 82 ntBASIC-0.62□□□□□ -2.51
CDX1P47902 RNU6-901P-201ENST00000384593 106 ntBASIC-0.62□□□□□ -2.51
CDX1P47902 SNORD56B-201ENST00000384713 71 ntBASIC-0.62□□□□□ -2.51
CDX1P47902 MIR204-201ENST00000385200 110 ntBASIC-0.62□□□□□ -2.51
CDX1P47902 SCARNA23-201ENST00000516060 130 ntBASIC-0.62□□□□□ -2.51
CDX1P47902 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.63□□□□□ -2.51
CDX1P47902 RNU6-900P-201ENST00000384498 102 ntBASIC-0.63□□□□□ -2.51
CDX1P47902 MIR3064-201ENST00000581130 66 ntBASIC-0.63□□□□□ -2.51
CDX1P47902 AC104996.3-201ENST00000590718 94 ntBASIC-0.63□□□□□ -2.51
CDX1P47902 SNORA63.2-201ENST00000362603 126 ntBASIC-0.64□□□□□ -2.51
CDX1P47902 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.64□□□□□ -2.51
CDX1P47902 SNORD42B-201ENST00000458893 67 ntBASIC-0.64□□□□□ -2.51
CDX1P47902 AC021146.6-201ENST00000514659 117 ntBASIC-0.64□□□□□ -2.51
CDX1P47902 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.64□□□□□ -2.51
CDX1P47902 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.64□□□□□ -2.51
CDX1P47902 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.65□□□□□ -2.51
CDX1P47902 MIR196A1-201ENST00000388006 70 ntBASIC-0.65□□□□□ -2.51
CDX1P47902 RNU6-972P-201ENST00000391208 107 ntBASIC-0.65□□□□□ -2.51
CDX1P47902 SNORD38.3-201ENST00000516599 73 ntBASIC-0.65□□□□□ -2.51
CDX1P47902 RNU6-881P-201ENST00000516813 102 ntBASIC-0.65□□□□□ -2.51
CDX1P47902 MIR4280-201ENST00000582178 76 ntBASIC-0.65□□□□□ -2.51
CDX1P47902 MIR3140-201ENST00000583685 90 ntBASIC-0.65□□□□□ -2.51
CDX1P47902 RNU6-959P-201ENST00000384671 107 ntBASIC-0.66□□□□□ -2.52
CDX1P47902 MIR1302-5-201ENST00000408164 150 ntBASIC-0.66□□□□□ -2.52
CDX1P47902 AC008267.6-201ENST00000441664 139 ntBASIC-0.66□□□□□ -2.52
CDX1P47902 RNA5SP67-201ENST00000516422 131 ntBASIC-0.66□□□□□ -2.52
CDX1P47902 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.66□□□□□ -2.52
CDX1P47902 MIR6851-201ENST00000617060 67 ntBASIC-0.66□□□□□ -2.52
CDX1P47902 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.66□□□□□ -2.52
CDX1P47902 Y_RNA.261-201ENST00000364631 102 ntBASIC-0.67□□□□□ -2.52
CDX1P47902 MIR582-201ENST00000365731 98 ntBASIC-0.67□□□□□ -2.52
CDX1P47902 SNORA49-201ENST00000386157 136 ntBASIC-0.67□□□□□ -2.52
CDX1P47902 MIR548E-201ENST00000408287 88 ntBASIC-0.67□□□□□ -2.52
CDX1P47902 SNORA19.1-201ENST00000410656 129 ntBASIC-0.67□□□□□ -2.52
CDX1P47902 RNU6-904P-201ENST00000516206 101 ntBASIC-0.67□□□□□ -2.52
CDX1P47902 MIR409-201ENST00000362237 79 ntBASIC-0.68□□□□□ -2.52
CDX1P47902 SNORD58A-201ENST00000383875 65 ntBASIC-0.68□□□□□ -2.52
CDX1P47902 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.68□□□□□ -2.52
CDX1P47902 RNY1P7-201ENST00000384743 110 ntBASIC-0.68□□□□□ -2.52
CDX1P47902 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.69□□□□□ -2.52
CDX1P47902 RNU6-721P-201ENST00000410155 105 ntBASIC-0.69□□□□□ -2.52
CDX1P47902 RNU6-887P-201ENST00000410660 100 ntBASIC-0.69□□□□□ -2.52
CDX1P47902 MTATP6P29-201ENST00000415057 132 ntBASIC-0.69□□□□□ -2.52
CDX1P47902 snoU13.13-201ENST00000458842 104 ntBASIC-0.69□□□□□ -2.52
CDX1P47902 SNORA40.17-201ENST00000517256 115 ntBASIC-0.69□□□□□ -2.52
CDX1P47902 SNORD114-25-201ENST00000363742 72 ntBASIC-0.7□□□□□ -2.52
CDX1P47902 SNORD83B-201ENST00000386745 93 ntBASIC-0.7□□□□□ -2.52
CDX1P47902 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.7□□□□□ -2.52
CDX1P47902 RNU6-62P-201ENST00000516526 102 ntBASIC-0.7□□□□□ -2.52
CDX1P47902 MIR3681-201ENST00000580089 72 ntBASIC-0.7□□□□□ -2.52
CDX1P47902 RNU6-495P-201ENST00000362995 107 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 MT-TR-201ENST00000387439 65 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 RNA5SP292-201ENST00000390974 118 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 SNORA13-201ENST00000458790 133 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 SNORA18.5-201ENST00000516616 101 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 MIR3179-1-201ENST00000578940 84 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 MIR3179-2-201ENST00000579107 84 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 MIR3179-3-201ENST00000579566 84 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 AC145423.2-201ENST00000610631 239 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 MIR3179-4-201ENST00000617599 84 ntBASIC-0.71□□□□□ -2.52
CDX1P47902 RNU6-502P-201ENST00000362419 108 ntBASIC-0.72□□□□□ -2.52
CDX1P47902 RNU4-32P-201ENST00000363404 141 ntBASIC-0.72□□□□□ -2.52
CDX1P47902 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.72□□□□□ -2.52
CDX1P47902 RNU6-476P-201ENST00000384726 107 ntBASIC-0.72□□□□□ -2.52
CDX1P47902 RNU7-55P-201ENST00000459426 62 ntBASIC-0.72□□□□□ -2.52
CDX1P47902 MIR518B-201ENST00000385127 83 ntBASIC-0.73□□□□□ -2.53
CDX1P47902 MIR548M-201ENST00000408260 86 ntBASIC-0.73□□□□□ -2.53
CDX1P47902 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.73□□□□□ -2.53
CDX1P47902 AL500527.2-201ENST00000454105 95 ntBASIC-0.73□□□□□ -2.53
CDX1P47902 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.73□□□□□ -2.53
CDX1P47902 AC097510.1-201ENST00000510945 133 ntBASIC-0.73□□□□□ -2.53
CDX1P47902 AL627230.5-201ENST00000619807 58 ntBASIC-0.73□□□□□ -2.53
CDX1P47902 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-0.74□□□□□ -2.53
CDX1P47902 TMSB4XP3-201ENST00000445144 114 ntBASIC-0.74□□□□□ -2.53
CDX1P47902 SNORD22.1-201ENST00000516331 125 ntBASIC-0.74□□□□□ -2.53
CDX1P47902 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.74□□□□□ -2.53
CDX1P47902 AL365222.1-201ENST00000614661 98 ntBASIC-0.74□□□□□ -2.53
CDX1P47902 SNORD116-10-201ENST00000363791 102 ntBASIC-0.75□□□□□ -2.53
CDX1P47902 RNU6-81P-201ENST00000365608 104 ntBASIC-0.75□□□□□ -2.53
CDX1P47902 MIR590-201ENST00000385008 97 ntBASIC-0.75□□□□□ -2.53
CDX1P47902 MIR517B-201ENST00000385102 67 ntBASIC-0.75□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 222.5 ms