Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
CNTN3Q9P232 RNU1-78P-201ENST00000391248 165 ntBASIC2.05□□□□□ -2.08
CNTN3Q9P232 AC005908.1-201ENST00000468701 347 ntBASIC2.05□□□□□ -2.08
CNTN3Q9P232 MIR3664-201ENST00000579074 99 ntBASIC2.05□□□□□ -2.08
CNTN3Q9P232 AC025521.1-201ENST00000621624 286 ntBASIC2.05□□□□□ -2.08
CNTN3Q9P232 RNA5SP133-201ENST00000363368 119 ntBASIC2.04□□□□□ -2.08
CNTN3Q9P232 SUMO2P12-201ENST00000405924 140 ntBASIC2.04□□□□□ -2.08
CNTN3Q9P232 Y_RNA.611-201ENST00000410682 108 ntBASIC2.04□□□□□ -2.08
CNTN3Q9P232 MIR3937-201ENST00000580135 106 ntBASIC2.04□□□□□ -2.08
CNTN3Q9P232 MIR548BB-201ENST00000626714 66 ntBASIC2.04□□□□□ -2.08
CNTN3Q9P232 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CNTN3Q9P232 Y_RNA.4-201ENST00000362333 112 ntBASIC2.03□□□□□ -2.08
CNTN3Q9P232 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.03□□□□□ -2.08
CNTN3Q9P232 AC245517.4-201ENST00000448601 281 ntBASIC2.03□□□□□ -2.08
CNTN3Q9P232 RNU6-850P-201ENST00000516934 103 ntBASIC2.03□□□□□ -2.08
CNTN3Q9P232 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.03□□□□□ -2.08
CNTN3Q9P232 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
CNTN3Q9P232 MIR1255A-201ENST00000408338 113 ntBASIC2.02□□□□□ -2.09
CNTN3Q9P232 AC003989.2-201ENST00000440224 169 ntBASIC2.02□□□□□ -2.09
CNTN3Q9P232 AC019176.1-201ENST00000518519 225 ntBASIC2.02□□□□□ -2.09
CNTN3Q9P232 MIR4524B-201ENST00000581569 115 ntBASIC2.02□□□□□ -2.09
CNTN3Q9P232 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC2.02□□□□□ -2.09
CNTN3Q9P232 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.02□□□□□ -2.09
CNTN3Q9P232 Y_RNA.57-201ENST00000362806 113 ntBASIC2.01□□□□□ -2.09
CNTN3Q9P232 RNU6-53P-201ENST00000365367 106 ntBASIC2.01□□□□□ -2.09
CNTN3Q9P232 MIR9-3-201ENST00000385084 90 ntBASIC2.01□□□□□ -2.09
CNTN3Q9P232 SNORA40.18-201ENST00000391200 128 ntBASIC2.01□□□□□ -2.09
CNTN3Q9P232 RNU6-519P-201ENST00000410590 108 ntBASIC2.01□□□□□ -2.09
CNTN3Q9P232 AC015712.3-201ENST00000559380 164 ntBASIC2.01□□□□□ -2.09
CNTN3Q9P232 AL512598.1-201ENST00000610158 273 ntBASIC2.01□□□□□ -2.09
CNTN3Q9P232 AC006160.2-201ENST00000637708 154 ntBASIC2.01□□□□□ -2.09
CNTN3Q9P232 Y_RNA.191-201ENST00000363972 113 ntBASIC2□□□□□ -2.09
CNTN3Q9P232 Y_RNA.607-201ENST00000410597 98 ntBASIC2□□□□□ -2.09
CNTN3Q9P232 RNU6-1054P-201ENST00000411293 104 ntBASIC2□□□□□ -2.09
CNTN3Q9P232 RNA5SP395-201ENST00000516567 118 ntBASIC2□□□□□ -2.09
CNTN3Q9P232 AC020891.4-201ENST00000605745 93 ntBASIC2□□□□□ -2.09
CNTN3Q9P232 RNU4-58P-201ENST00000363192 141 ntBASIC1.99□□□□□ -2.09
CNTN3Q9P232 RNU6-654P-201ENST00000364373 107 ntBASIC1.99□□□□□ -2.09
CNTN3Q9P232 RNU6-787P-201ENST00000384032 107 ntBASIC1.99□□□□□ -2.09
CNTN3Q9P232 Y_RNA.437-201ENST00000384113 113 ntBASIC1.99□□□□□ -2.09
CNTN3Q9P232 MIR519C-201ENST00000385053 87 ntBASIC1.99□□□□□ -2.09
CNTN3Q9P232 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
CNTN3Q9P232 AC108210.2-201ENST00000503681 201 ntBASIC1.99□□□□□ -2.09
CNTN3Q9P232 AL512310.8-201ENST00000550183 120 ntBASIC1.99□□□□□ -2.09
CNTN3Q9P232 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.99□□□□□ -2.09
CNTN3Q9P232 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.99□□□□□ -2.09
CNTN3Q9P232 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.99□□□□□ -2.09
CNTN3Q9P232 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.99□□□□□ -2.09
CNTN3Q9P232 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.98□□□□□ -2.09
CNTN3Q9P232 SNORD93-201ENST00000408813 74 ntBASIC1.98□□□□□ -2.09
CNTN3Q9P232 RNU4-83P-201ENST00000410863 133 ntBASIC1.98□□□□□ -2.09
CNTN3Q9P232 RNU6-165P-201ENST00000517170 99 ntBASIC1.98□□□□□ -2.09
CNTN3Q9P232 MIR4491-201ENST00000581087 68 ntBASIC1.98□□□□□ -2.09
CNTN3Q9P232 uc_338.6-201ENST00000613544 171 ntBASIC1.98□□□□□ -2.09
CNTN3Q9P232 uc_338.20-201ENST00000621563 178 ntBASIC1.98□□□□□ -2.09
CNTN3Q9P232 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.98□□□□□ -2.09
CNTN3Q9P232 BX276092.1-201ENST00000427368 251 ntBASIC1.97□□□□□ -2.09
CNTN3Q9P232 RNA5SP364-201ENST00000516938 78 ntBASIC1.97□□□□□ -2.09
CNTN3Q9P232 RNU6-548P-201ENST00000517083 115 ntBASIC1.97□□□□□ -2.09
CNTN3Q9P232 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.97□□□□□ -2.09
CNTN3Q9P232 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.09
CNTN3Q9P232 AL161722.3-201ENST00000605789 2983 ntBASIC1.96□□□□□ -2.1
CNTN3Q9P232 SNORD115-37-201ENST00000363768 82 ntBASIC1.96□□□□□ -2.1
CNTN3Q9P232 RNU1-36P-201ENST00000365130 165 ntBASIC1.96□□□□□ -2.1
CNTN3Q9P232 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.96□□□□□ -2.1
CNTN3Q9P232 AC093729.1-201ENST00000513074 128 ntBASIC1.96□□□□□ -2.1
CNTN3Q9P232 RNU6-1194P-201ENST00000516208 104 ntBASIC1.96□□□□□ -2.1
CNTN3Q9P232 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CNTN3Q9P232 RNA5SP432-201ENST00000362480 116 ntBASIC1.95□□□□□ -2.1
CNTN3Q9P232 RNU6-279P-201ENST00000391297 101 ntBASIC1.95□□□□□ -2.1
CNTN3Q9P232 RNA5SP95-201ENST00000410319 137 ntBASIC1.95□□□□□ -2.1
CNTN3Q9P232 Y_RNA.648-201ENST00000459455 110 ntBASIC1.95□□□□□ -2.1
CNTN3Q9P232 RNU6-237P-201ENST00000515985 71 ntBASIC1.95□□□□□ -2.1
CNTN3Q9P232 RNU6-902P-201ENST00000517212 91 ntBASIC1.95□□□□□ -2.1
CNTN3Q9P232 MIR4769-201ENST00000584126 77 ntBASIC1.95□□□□□ -2.1
CNTN3Q9P232 AC084768.2-201ENST00000622736 221 ntBASIC1.95□□□□□ -2.1
CNTN3Q9P232 SNORA16.1-201ENST00000364597 132 ntBASIC1.94□□□□□ -2.1
CNTN3Q9P232 SNORD113.3-201ENST00000364630 78 ntBASIC1.94□□□□□ -2.1
CNTN3Q9P232 Y_RNA.588-201ENST00000391254 102 ntBASIC1.94□□□□□ -2.1
CNTN3Q9P232 MIR1236-201ENST00000408340 102 ntBASIC1.94□□□□□ -2.1
CNTN3Q9P232 RNA5SP225-201ENST00000410874 135 ntBASIC1.94□□□□□ -2.1
CNTN3Q9P232 AC087499.7-201ENST00000441958 109 ntBASIC1.94□□□□□ -2.1
CNTN3Q9P232 SNORD4B-201ENST00000459083 72 ntBASIC1.94□□□□□ -2.1
CNTN3Q9P232 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.94□□□□□ -2.1
CNTN3Q9P232 AC012493.3-201ENST00000604494 112 ntBASIC1.94□□□□□ -2.1
CNTN3Q9P232 SNORD115-27-201ENST00000364430 82 ntBASIC1.93□□□□□ -2.1
CNTN3Q9P232 Y_RNA.313-201ENST00000365095 103 ntBASIC1.93□□□□□ -2.1
CNTN3Q9P232 RNU6-1254P-201ENST00000391266 104 ntBASIC1.93□□□□□ -2.1
CNTN3Q9P232 RNU6-531P-201ENST00000516694 104 ntBASIC1.93□□□□□ -2.1
CNTN3Q9P232 MIR4255-201ENST00000579351 72 ntBASIC1.93□□□□□ -2.1
CNTN3Q9P232 MIR4285-201ENST00000581001 85 ntBASIC1.93□□□□□ -2.1
CNTN3Q9P232 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CNTN3Q9P232 RNU6-524P-201ENST00000384270 107 ntBASIC1.92□□□□□ -2.1
CNTN3Q9P232 SNORA72.6-201ENST00000384520 129 ntBASIC1.92□□□□□ -2.1
CNTN3Q9P232 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
CNTN3Q9P232 RNU7-185P-201ENST00000459215 60 ntBASIC1.92□□□□□ -2.1
CNTN3Q9P232 RN7SKP88-201ENST00000516847 250 ntBASIC1.92□□□□□ -2.1
CNTN3Q9P232 RNU7-10P-201ENST00000607194 63 ntBASIC1.92□□□□□ -2.1
CNTN3Q9P232 7SK.8-201ENST00000612110 250 ntBASIC1.92□□□□□ -2.1
CNTN3Q9P232 7SK.11-201ENST00000615477 250 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms