Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 snoU13.23-201ENST00000458863 104 ntBASIC3.76□□□□□ -1.81
HOXD11P31277 AC025627.2-201ENST00000576220 160 ntBASIC3.76□□□□□ -1.81
HOXD11P31277 MIR4460-201ENST00000577862 86 ntBASIC3.76□□□□□ -1.81
HOXD11P31277 SNORA70B-201ENST00000384210 135 ntBASIC3.75□□□□□ -1.81
HOXD11P31277 MIR1179-201ENST00000408703 91 ntBASIC3.75□□□□□ -1.81
HOXD11P31277 RNA5SP356-201ENST00000515972 94 ntBASIC3.75□□□□□ -1.81
HOXD11P31277 SNORA31.14-201ENST00000516728 116 ntBASIC3.75□□□□□ -1.81
HOXD11P31277 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
HOXD11P31277 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXD11P31277 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
HOXD11P31277 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD11P31277 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD11P31277 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD11P31277 Y_RNA.125-201ENST00000363371 111 ntBASIC3.74□□□□□ -1.81
HOXD11P31277 RNA5SP508-201ENST00000411327 119 ntBASIC3.74□□□□□ -1.81
HOXD11P31277 RPL29P14-201ENST00000495837 428 ntBASIC3.74□□□□□ -1.81
HOXD11P31277 AC245166.1-201ENST00000521012 253 ntBASIC3.74□□□□□ -1.81
HOXD11P31277 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD11P31277 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD11P31277 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
HOXD11P31277 Y_RNA.32-201ENST00000362589 110 ntBASIC3.73□□□□□ -1.81
HOXD11P31277 SNORA40B-201ENST00000385573 128 ntBASIC3.73□□□□□ -1.81
HOXD11P31277 MT-TY-201ENST00000387409 66 ntBASIC3.73□□□□□ -1.81
HOXD11P31277 RNU6-482P-201ENST00000391068 107 ntBASIC3.73□□□□□ -1.81
HOXD11P31277 RN7SL633P-201ENST00000488974 297 ntBASIC3.73□□□□□ -1.81
HOXD11P31277 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.73□□□□□ -1.81
HOXD11P31277 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD11P31277 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
HOXD11P31277 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD11P31277 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
HOXD11P31277 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
HOXD11P31277 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD11P31277 RNU1-123P-201ENST00000458950 160 ntBASIC3.72□□□□□ -1.81
HOXD11P31277 AC036111.3-201ENST00000526389 112 ntBASIC3.72□□□□□ -1.81
HOXD11P31277 MIR7851-201ENST00000610611 160 ntBASIC3.72□□□□□ -1.81
HOXD11P31277 SNORA50A-202ENST00000629536 136 ntBASIC3.72□□□□□ -1.81
HOXD11P31277 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXD11P31277 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD11P31277 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
HOXD11P31277 SNORA9.1-201ENST00000362412 131 ntBASIC3.71□□□□□ -1.82
HOXD11P31277 RNU7-40P-201ENST00000516397 64 ntBASIC3.71□□□□□ -1.82
HOXD11P31277 MIR7702-201ENST00000621931 59 ntBASIC3.71□□□□□ -1.82
HOXD11P31277 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD11P31277 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
HOXD11P31277 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD11P31277 SNORA67.3-201ENST00000384366 140 ntBASIC3.7□□□□□ -1.82
HOXD11P31277 RNU6-548P-201ENST00000517083 115 ntBASIC3.7□□□□□ -1.82
HOXD11P31277 MIR4529-201ENST00000578110 78 ntBASIC3.7□□□□□ -1.82
HOXD11P31277 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD11P31277 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD11P31277 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD11P31277 Y_RNA.164-201ENST00000363709 102 ntBASIC3.69□□□□□ -1.82
HOXD11P31277 SNORA25.8-201ENST00000364831 128 ntBASIC3.69□□□□□ -1.82
HOXD11P31277 SNORA33.1-201ENST00000364957 130 ntBASIC3.69□□□□□ -1.82
HOXD11P31277 RNU1-119P-201ENST00000391122 165 ntBASIC3.69□□□□□ -1.82
HOXD11P31277 MIR1287-201ENST00000408492 90 ntBASIC3.69□□□□□ -1.82
HOXD11P31277 RN7SL93P-201ENST00000463035 293 ntBASIC3.69□□□□□ -1.82
HOXD11P31277 RNU4ATAC4P-201ENST00000516307 126 ntBASIC3.69□□□□□ -1.82
HOXD11P31277 uc_338.16-201ENST00000621804 95 ntBASIC3.69□□□□□ -1.82
HOXD11P31277 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.69□□□□□ -1.82
HOXD11P31277 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC3.69□□□□□ -1.82
HOXD11P31277 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD11P31277 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
HOXD11P31277 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD11P31277 RNA5SP399-201ENST00000364003 117 ntBASIC3.68□□□□□ -1.82
HOXD11P31277 RNU6-439P-201ENST00000384188 106 ntBASIC3.68□□□□□ -1.82
HOXD11P31277 RPS27P29-201ENST00000463110 252 ntBASIC3.68□□□□□ -1.82
HOXD11P31277 MIR4658-201ENST00000584344 65 ntBASIC3.68□□□□□ -1.82
HOXD11P31277 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD11P31277 AC244205.2-202ENST00000635781 342 ntBASIC3.68□□□□□ -1.82
HOXD11P31277 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
HOXD11P31277 RNU6-810P-201ENST00000364001 107 ntBASIC3.67□□□□□ -1.82
HOXD11P31277 SNORD116-16-201ENST00000384533 92 ntBASIC3.67□□□□□ -1.82
HOXD11P31277 SNORD111-201ENST00000408139 94 ntBASIC3.67□□□□□ -1.82
HOXD11P31277 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD11P31277 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD11P31277 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD11P31277 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
HOXD11P31277 RNU6-696P-201ENST00000390834 107 ntBASIC3.66□□□□□ -1.82
HOXD11P31277 snoU13.15-201ENST00000459407 104 ntBASIC3.66□□□□□ -1.82
HOXD11P31277 AC015712.3-201ENST00000559380 164 ntBASIC3.66□□□□□ -1.82
HOXD11P31277 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD11P31277 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD11P31277 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD11P31277 RNU4-35P-201ENST00000362588 141 ntBASIC3.65□□□□□ -1.83
HOXD11P31277 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD11P31277 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
HOXD11P31277 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
HOXD11P31277 AL021368.2-201ENST00000606125 5352 ntBASIC3.65□□□□□ -1.83
HOXD11P31277 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
HOXD11P31277 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD11P31277 MIR184-201ENST00000384962 84 ntBASIC3.64□□□□□ -1.83
HOXD11P31277 AL157834.3-201ENST00000615543 103 ntBASIC3.64□□□□□ -1.83
HOXD11P31277 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD11P31277 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
HOXD11P31277 SNORD35B-201ENST00000363660 87 ntBASIC3.63□□□□□ -1.83
HOXD11P31277 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD11P31277 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD11P31277 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
HOXD11P31277 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 266.6 ms