Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 RNU6-396P-201ENST00000365369 105 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.377-201ENST00000365644 108 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC027119.1-201ENST00000440877 241 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 snoU13.2-201ENST00000459201 104 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU7-137P-201ENST00000516788 62 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR3937-201ENST00000580135 106 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AL512310.12-203ENST00000640543 90 ntBASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.107-201ENST00000363190 121 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNY1P13-201ENST00000365030 105 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.369-201ENST00000365568 117 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR1185-1-201ENST00000408598 86 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNA5SP237-201ENST00000410414 113 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC141846.1-201ENST00000568348 142 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR3198-2-201ENST00000577868 80 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR3664-201ENST00000579074 99 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR502-201ENST00000606349 86 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AL662814.1-201ENST00000617364 121 ntBASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 SNORD114-10-201ENST00000363409 72 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR488-201ENST00000365739 83 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.466-201ENST00000384294 113 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-1065P-201ENST00000384513 106 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR588-201ENST00000384900 83 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RPL30P7-201ENST00000479312 323 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 UBL5P1-201ENST00000507979 193 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC108729.3-201ENST00000513484 108 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-165P-201ENST00000517170 99 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC006254.2-201ENST00000603259 279 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AL442128.1-201ENST00000615151 90 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC105081.1-201ENST00000617727 106 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR2052-201ENST00000636055 55 ntBASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC131280.1-202ENST00000624067 4211 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU1-17P-201ENST00000363022 152 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNA5SP264-201ENST00000363115 107 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-1131P-201ENST00000364955 107 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.448-201ENST00000384185 108 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-795P-201ENST00000516323 103 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR2115-201ENST00000516657 100 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 RNU6-548P-201ENST00000517083 115 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR6715A-201ENST00000615929 79 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 AC012531.4-201ENST00000616509 177 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR6516-201ENST00000630554 81 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 MIR4679-1-201ENST00000637619 75 ntBASIC1.78□□□□□ -2.12
NPHP3-ACAD11A0A0J9YXS1 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.77□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR103A2-201ENST00000362154 78 ntBASIC1.77□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-1321P-201ENST00000390905 107 ntBASIC1.77□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AL512310.8-201ENST00000550183 120 ntBASIC1.77□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR4264-201ENST00000583520 66 ntBASIC1.77□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR548Z-201ENST00000584743 97 ntBASIC1.77□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AP000753.3-201ENST00000604083 169 ntBASIC1.77□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR6740-201ENST00000618268 113 ntBASIC1.77□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-170P-201ENST00000362832 104 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 SNORD45B-201ENST00000364617 72 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-49P-201ENST00000384256 107 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR34C-201ENST00000384831 77 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR563-201ENST00000385080 79 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MT-TN-201ENST00000387400 73 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-205P-201ENST00000390858 107 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR1323-201ENST00000408090 73 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AC004941.2-201ENST00000427009 228 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AC008834.1-201ENST00000511612 175 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.659-201ENST00000515994 113 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU11-2P-201ENST00000516898 142 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-1006P-201ENST00000516998 103 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AC015712.3-201ENST00000559380 164 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR4255-201ENST00000579351 72 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AC091304.10-201ENST00000641554 121 ntBASIC1.76□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNA5SP99-201ENST00000364020 114 ntBASIC1.75□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.247-201ENST00000364500 92 ntBASIC1.75□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 SNORA17.3-201ENST00000391159 129 ntBASIC1.75□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.75□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.75□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.75□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-654P-201ENST00000364373 107 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-865P-201ENST00000364772 107 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.342-201ENST00000365352 113 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-949P-201ENST00000384040 107 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU1-78P-201ENST00000391248 165 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AC096949.1-201ENST00000412047 152 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RPS27P16-201ENST00000425758 201 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR4777-201ENST00000583710 86 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AC096720.1-201ENST00000604441 183 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR376B-201ENST00000614515 100 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MALAT1.1-201ENST00000618249 95 ntBASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.74□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.95-201ENST00000363079 95 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNY1P7-201ENST00000384743 110 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-644P-201ENST00000391155 98 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms