Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
USP42Q9H9J4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 DRAXINP1-201ENST00000437611 948 ntBASIC23.94■■□□□ 1.42
USP42Q9H9J4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC23.94■■□□□ 1.42
USP42Q9H9J4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC23.94■■□□□ 1.42
USP42Q9H9J4 AL136038.4-201ENST00000603606 1261 ntBASIC23.94■■□□□ 1.42
USP42Q9H9J4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC23.94■■□□□ 1.42
USP42Q9H9J4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
USP42Q9H9J4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 KRT18P1-202ENST00000452408 1331 ntBASIC23.94■■□□□ 1.42
USP42Q9H9J4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP42Q9H9J4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP42Q9H9J4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP42Q9H9J4 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
USP42Q9H9J4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP42Q9H9J4 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP42Q9H9J4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP42Q9H9J4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP42Q9H9J4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC23.93■■□□□ 1.42
USP42Q9H9J4 TSPY22P-201ENST00000427496 604 ntBASIC23.93■■□□□ 1.42
USP42Q9H9J4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC23.93■■□□□ 1.42
USP42Q9H9J4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
USP42Q9H9J4 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC23.93■■□□□ 1.42
USP42Q9H9J4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP42Q9H9J4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC23.93■■□□□ 1.42
USP42Q9H9J4 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP42Q9H9J4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP42Q9H9J4 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP42Q9H9J4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP42Q9H9J4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP42Q9H9J4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP42Q9H9J4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP42Q9H9J4 MCCD1P1-208ENST00000445732 328 ntBASIC23.92■■□□□ 1.42
USP42Q9H9J4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP42Q9H9J4 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP42Q9H9J4 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP42Q9H9J4 CIB2-208ENST00000560618 804 ntTSL 2 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 NAA38-203ENST00000575071 553 ntTSL 2 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 SDHAP1-207ENST00000440850 2000 ntBASIC23.92■■□□□ 1.42
USP42Q9H9J4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC23.92■■□□□ 1.42
USP42Q9H9J4 AL391807.1-203ENST00000604392 2365 ntBASIC23.92■■□□□ 1.42
USP42Q9H9J4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.91■■□□□ 1.42
USP42Q9H9J4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC23.91■■□□□ 1.42
USP42Q9H9J4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC23.91■■□□□ 1.42
USP42Q9H9J4 GRAMD4P1-201ENST00000435181 1110 ntBASIC23.91■■□□□ 1.42
USP42Q9H9J4 AC079781.3-201ENST00000449110 356 ntBASIC23.91■■□□□ 1.42
USP42Q9H9J4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC23.91■■□□□ 1.42
USP42Q9H9J4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 RNF126P1-202ENST00000569893 925 ntBASIC23.91■■□□□ 1.42
USP42Q9H9J4 MIR3917-201ENST00000580971 93 ntBASIC23.91■■□□□ 1.42
USP42Q9H9J4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC23.91■■□□□ 1.42
USP42Q9H9J4 AC023511.2-201ENST00000618803 211 ntBASIC23.91■■□□□ 1.42
USP42Q9H9J4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP42Q9H9J4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP42Q9H9J4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP42Q9H9J4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP42Q9H9J4 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP42Q9H9J4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
USP42Q9H9J4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP42Q9H9J4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 596.5 ms