Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AC098818.2-201ENST00000564925 2320 ntBASIC26.39■■□□□ 1.81
USP47Q96K76 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.81
USP47Q96K76 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC26.38■■□□□ 1.81
USP47Q96K76 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 AC018445.3-201ENST00000624177 1945 ntBASIC26.38■■□□□ 1.81
USP47Q96K76 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 Telomerase-vert.1-201ENST00000363312 438 ntBASIC26.38■■□□□ 1.81
USP47Q96K76 LIN28AP1-201ENST00000429574 405 ntBASIC26.38■■□□□ 1.81
USP47Q96K76 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 ATP5G1P1-201ENST00000448724 379 ntBASIC26.38■■□□□ 1.81
USP47Q96K76 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 SNAI3-AS1-205ENST00000568633 2096 ntBASIC26.38■■□□□ 1.81
USP47Q96K76 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
USP47Q96K76 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP47Q96K76 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
USP47Q96K76 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC26.37■■□□□ 1.81
USP47Q96K76 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC26.37■■□□□ 1.81
USP47Q96K76 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC26.37■■□□□ 1.81
USP47Q96K76 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC26.37■■□□□ 1.81
USP47Q96K76 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC26.37■■□□□ 1.81
USP47Q96K76 AL512604.3-201ENST00000569583 964 ntBASIC26.37■■□□□ 1.81
USP47Q96K76 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC26.37■■□□□ 1.81
USP47Q96K76 NT5C-211ENST00000582170 653 ntTSL 3 BASIC26.37■■□□□ 1.81
USP47Q96K76 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 AC093525.10-201ENST00000625130 1569 ntBASIC26.37■■□□□ 1.81
USP47Q96K76 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP47Q96K76 BX323043.1-201ENST00000641006 1765 ntBASIC26.37■■□□□ 1.81
USP47Q96K76 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
USP47Q96K76 CROCCP3-202ENST00000420820 1947 ntBASIC26.37■■□□□ 1.81
USP47Q96K76 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC26.36■■□□□ 1.81
USP47Q96K76 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP47Q96K76 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP47Q96K76 AC117947.1-201ENST00000427448 529 ntBASIC26.36■■□□□ 1.81
USP47Q96K76 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC26.36■■□□□ 1.81
USP47Q96K76 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP47Q96K76 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC26.36■■□□□ 1.81
USP47Q96K76 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP47Q96K76 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
USP47Q96K76 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP47Q96K76 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
USP47Q96K76 AL357033.4-201ENST00000617703 1807 ntBASIC26.35■■□□□ 1.81
USP47Q96K76 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC26.35■■□□□ 1.81
USP47Q96K76 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
USP47Q96K76 AL023973.1-201ENST00000624619 620 ntBASIC26.35■■□□□ 1.81
USP47Q96K76 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC26.35■■□□□ 1.81
USP47Q96K76 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
USP47Q96K76 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
USP47Q96K76 Z98044.1-201ENST00000632503 1764 ntBASIC26.35■■□□□ 1.81
USP47Q96K76 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP47Q96K76 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP47Q96K76 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
USP47Q96K76 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC26.34■■□□□ 1.81
USP47Q96K76 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC26.34■■□□□ 1.81
USP47Q96K76 NEK4P2-201ENST00000580004 1012 ntBASIC26.34■■□□□ 1.81
USP47Q96K76 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC26.34■■□□□ 1.81
USP47Q96K76 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC26.34■■□□□ 1.81
USP47Q96K76 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC26.34■■□□□ 1.81
USP47Q96K76 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
USP47Q96K76 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP47Q96K76 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
USP47Q96K76 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
USP47Q96K76 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
USP47Q96K76 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC26.33■■□□□ 1.81
USP47Q96K76 ARMC10P1-201ENST00000313754 855 ntBASIC26.33■■□□□ 1.81
USP47Q96K76 MIR564-202ENST00000385049 94 ntBASIC26.33■■□□□ 1.81
USP47Q96K76 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC26.33■■□□□ 1.81
USP47Q96K76 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP47Q96K76 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC26.33■■□□□ 1.81
USP47Q96K76 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP47Q96K76 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP47Q96K76 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC26.33■■□□□ 1.81
USP47Q96K76 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC26.33■■□□□ 1.81
USP47Q96K76 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP47Q96K76 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms