Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
TTC28Q96AY4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.14■□□□□ 0.66
TTC28Q96AY4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.14■□□□□ 0.66
TTC28Q96AY4 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.14■□□□□ 0.66
TTC28Q96AY4 AC005498.2-205ENST00000593218 784 ntBASIC19.14■□□□□ 0.66
TTC28Q96AY4 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.14■□□□□ 0.66
TTC28Q96AY4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.14■□□□□ 0.66
TTC28Q96AY4 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
TTC28Q96AY4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TTC28Q96AY4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TTC28Q96AY4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
TTC28Q96AY4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TTC28Q96AY4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
TTC28Q96AY4 AP003733.1-201ENST00000491725 852 ntBASIC19.14■□□□□ 0.65
TTC28Q96AY4 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.14■□□□□ 0.65
TTC28Q96AY4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TTC28Q96AY4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TTC28Q96AY4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TTC28Q96AY4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TTC28Q96AY4 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TTC28Q96AY4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TTC28Q96AY4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TTC28Q96AY4 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 AC025062.2-201ENST00000605477 670 ntBASIC19.13■□□□□ 0.65
TTC28Q96AY4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TTC28Q96AY4 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TTC28Q96AY4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 MIR3180-5-201ENST00000583743 153 ntBASIC19.13■□□□□ 0.65
TTC28Q96AY4 AL359881.2-201ENST00000602973 570 ntBASIC19.13■□□□□ 0.65
TTC28Q96AY4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
TTC28Q96AY4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TTC28Q96AY4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TTC28Q96AY4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.12■□□□□ 0.65
TTC28Q96AY4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TTC28Q96AY4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.12■□□□□ 0.65
TTC28Q96AY4 C20orf181-201ENST00000623918 480 ntBASIC19.12■□□□□ 0.65
TTC28Q96AY4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.12■□□□□ 0.65
TTC28Q96AY4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.12■□□□□ 0.65
TTC28Q96AY4 FEM1AP1-201ENST00000431297 1995 ntBASIC19.12■□□□□ 0.65
TTC28Q96AY4 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.12■□□□□ 0.65
TTC28Q96AY4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.12■□□□□ 0.65
TTC28Q96AY4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.12■□□□□ 0.65
TTC28Q96AY4 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.12■□□□□ 0.65
TTC28Q96AY4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TTC28Q96AY4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TTC28Q96AY4 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TTC28Q96AY4 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TTC28Q96AY4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 AL606495.2-201ENST00000605867 535 ntBASIC19.11■□□□□ 0.65
TTC28Q96AY4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TTC28Q96AY4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TTC28Q96AY4 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TTC28Q96AY4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TTC28Q96AY4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TTC28Q96AY4 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.11■□□□□ 0.65
TTC28Q96AY4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TTC28Q96AY4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms