Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.59■□□□□ 0.57
SRP54P61011 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SRP54P61011 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 TEX21P-204ENST00000641479 1693 ntBASIC18.59■□□□□ 0.57
SRP54P61011 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.59■□□□□ 0.57
SRP54P61011 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SRP54P61011 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SRP54P61011 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SRP54P61011 KRT8P3-201ENST00000519669 1449 ntBASIC18.58■□□□□ 0.57
SRP54P61011 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.58■□□□□ 0.57
SRP54P61011 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.58■□□□□ 0.57
SRP54P61011 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SRP54P61011 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SRP54P61011 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.58■□□□□ 0.57
SRP54P61011 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.58■□□□□ 0.57
SRP54P61011 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
SRP54P61011 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
SRP54P61011 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SRP54P61011 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.58■□□□□ 0.56
SRP54P61011 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SRP54P61011 AL023284.2-201ENST00000405850 579 ntBASIC18.58■□□□□ 0.56
SRP54P61011 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.58■□□□□ 0.56
SRP54P61011 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
SRP54P61011 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.58■□□□□ 0.56
SRP54P61011 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.58■□□□□ 0.56
SRP54P61011 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SRP54P61011 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SRP54P61011 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SRP54P61011 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.58■□□□□ 0.56
SRP54P61011 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.58■□□□□ 0.56
SRP54P61011 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SRP54P61011 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SRP54P61011 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.58■□□□□ 0.56
SRP54P61011 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SRP54P61011 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SRP54P61011 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.58■□□□□ 0.56
SRP54P61011 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.58■□□□□ 0.56
SRP54P61011 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SRP54P61011 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.57■□□□□ 0.56
SRP54P61011 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.57■□□□□ 0.56
SRP54P61011 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.57■□□□□ 0.56
SRP54P61011 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.57■□□□□ 0.56
SRP54P61011 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.57■□□□□ 0.56
SRP54P61011 GCSHP2-201ENST00000560971 527 ntBASIC18.57■□□□□ 0.56
SRP54P61011 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.57■□□□□ 0.56
SRP54P61011 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.57■□□□□ 0.56
SRP54P61011 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.57■□□□□ 0.56
SRP54P61011 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SRP54P61011 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.57■□□□□ 0.56
SRP54P61011 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
SRP54P61011 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SRP54P61011 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 AL158211.5-201ENST00000623583 2518 ntBASIC18.57■□□□□ 0.56
SRP54P61011 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.57■□□□□ 0.56
SRP54P61011 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.57■□□□□ 0.56
SRP54P61011 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SRP54P61011 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SRP54P61011 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.56■□□□□ 0.56
SRP54P61011 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.56■□□□□ 0.56
SRP54P61011 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.56■□□□□ 0.56
SRP54P61011 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.56■□□□□ 0.56
SRP54P61011 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.56■□□□□ 0.56
SRP54P61011 MCCD1P1-208ENST00000445732 328 ntBASIC18.56■□□□□ 0.56
SRP54P61011 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.56■□□□□ 0.56
SRP54P61011 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 AL358472.4-201ENST00000633140 710 ntBASIC18.56■□□□□ 0.56
SRP54P61011 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.56■□□□□ 0.56
SRP54P61011 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.56■□□□□ 0.56
SRP54P61011 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.56■□□□□ 0.56
SRP54P61011 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms