Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.2■□□□□ 0.98
CHMP2AO43633 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
CHMP2AO43633 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CHMP2AO43633 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
CHMP2AO43633 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CHMP2AO43633 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.2■□□□□ 0.98
CHMP2AO43633 AC006011.2-201ENST00000621313 1158 ntBASIC21.2■□□□□ 0.98
CHMP2AO43633 AL138966.2-201ENST00000621997 464 ntBASIC21.2■□□□□ 0.98
CHMP2AO43633 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.2■□□□□ 0.98
CHMP2AO43633 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.2■□□□□ 0.98
CHMP2AO43633 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.2■□□□□ 0.98
CHMP2AO43633 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP2AO43633 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CHMP2AO43633 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CHMP2AO43633 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.2■□□□□ 0.98
CHMP2AO43633 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.19■□□□□ 0.98
CHMP2AO43633 RCC2P3-201ENST00000418112 1537 ntBASIC21.19■□□□□ 0.98
CHMP2AO43633 AC036111.1-201ENST00000533973 1582 ntBASIC21.19■□□□□ 0.98
CHMP2AO43633 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.19■□□□□ 0.98
CHMP2AO43633 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.19■□□□□ 0.98
CHMP2AO43633 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
CHMP2AO43633 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CHMP2AO43633 AL512353.2-201ENST00000448759 1962 ntBASIC21.19■□□□□ 0.98
CHMP2AO43633 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP2AO43633 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.18■□□□□ 0.98
CHMP2AO43633 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 MIR1224-201ENST00000408193 85 ntBASIC21.18■□□□□ 0.98
CHMP2AO43633 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.18■□□□□ 0.98
CHMP2AO43633 MCCD1P1-208ENST00000445732 328 ntBASIC21.18■□□□□ 0.98
CHMP2AO43633 AC104076.2-201ENST00000448912 469 ntBASIC21.18■□□□□ 0.98
CHMP2AO43633 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.18■□□□□ 0.98
CHMP2AO43633 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.18■□□□□ 0.98
CHMP2AO43633 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.18■□□□□ 0.98
CHMP2AO43633 CR769767.2-201ENST00000622735 460 ntBASIC21.18■□□□□ 0.98
CHMP2AO43633 AC141257.4-201ENST00000634557 245 ntBASIC21.18■□□□□ 0.98
CHMP2AO43633 AC136944.6-201ENST00000634818 245 ntBASIC21.18■□□□□ 0.98
CHMP2AO43633 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.18■□□□□ 0.98
CHMP2AO43633 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP2AO43633 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CHMP2AO43633 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP2AO43633 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP2AO43633 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP2AO43633 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CHMP2AO43633 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP2AO43633 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP2AO43633 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.17■□□□□ 0.98
CHMP2AO43633 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 AC009947.2-201ENST00000444014 672 ntBASIC21.17■□□□□ 0.98
CHMP2AO43633 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 AC139887.4-201ENST00000607877 719 ntBASIC21.17■□□□□ 0.98
CHMP2AO43633 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CHMP2AO43633 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CHMP2AO43633 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.17■□□□□ 0.98
CHMP2AO43633 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.17■□□□□ 0.98
CHMP2AO43633 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP2AO43633 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.17■□□□□ 0.98
CHMP2AO43633 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
CHMP2AO43633 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms