Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNF39Q9H2S5 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
RNF39Q9H2S5 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
RNF39Q9H2S5 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.25□□□□□ -1.73
RNF39Q9H2S5 NEAT1-202ENST00000501122 22743 ntBASIC4.25□□□□□ -1.73
RNF39Q9H2S5 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
RNF39Q9H2S5 SNORA68.1-201ENST00000364537 132 ntBASIC4.25□□□□□ -1.73
RNF39Q9H2S5 RN7SL594P-201ENST00000470590 287 ntBASIC4.25□□□□□ -1.73
RNF39Q9H2S5 RNU6-765P-201ENST00000516916 99 ntBASIC4.25□□□□□ -1.73
RNF39Q9H2S5 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
RNF39Q9H2S5 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RNF39Q9H2S5 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.24□□□□□ -1.73
RNF39Q9H2S5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
RNF39Q9H2S5 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
RNF39Q9H2S5 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RNF39Q9H2S5 RNU6-1204P-201ENST00000363948 107 ntBASIC4.24□□□□□ -1.73
RNF39Q9H2S5 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.24□□□□□ -1.73
RNF39Q9H2S5 SNORA70.4-201ENST00000365509 134 ntBASIC4.24□□□□□ -1.73
RNF39Q9H2S5 SNORA11.1-201ENST00000408133 129 ntBASIC4.24□□□□□ -1.73
RNF39Q9H2S5 AC083863.1-201ENST00000438811 231 ntBASIC4.24□□□□□ -1.73
RNF39Q9H2S5 RPS26P28-201ENST00000470806 348 ntBASIC4.24□□□□□ -1.73
RNF39Q9H2S5 RNU7-13P-201ENST00000516413 62 ntBASIC4.24□□□□□ -1.73
RNF39Q9H2S5 SNORD111.1-201ENST00000516421 86 ntBASIC4.24□□□□□ -1.73
RNF39Q9H2S5 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.24□□□□□ -1.73
RNF39Q9H2S5 MAPK10-362ENST00000641864 4484 ntBASIC4.24□□□□□ -1.73
RNF39Q9H2S5 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
RNF39Q9H2S5 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
RNF39Q9H2S5 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
RNF39Q9H2S5 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
RNF39Q9H2S5 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.23□□□□□ -1.73
RNF39Q9H2S5 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
RNF39Q9H2S5 SNORA71.3-201ENST00000362582 128 ntBASIC4.23□□□□□ -1.73
RNF39Q9H2S5 SNORA3.3-201ENST00000408712 125 ntBASIC4.23□□□□□ -1.73
RNF39Q9H2S5 SNORA3C-201ENST00000408792 125 ntBASIC4.23□□□□□ -1.73
RNF39Q9H2S5 AP004217.1-201ENST00000480579 346 ntBASIC4.23□□□□□ -1.73
RNF39Q9H2S5 AC026271.5-201ENST00000577873 130 ntBASIC4.23□□□□□ -1.73
RNF39Q9H2S5 AC087499.8-201ENST00000578406 226 ntBASIC4.23□□□□□ -1.73
RNF39Q9H2S5 AC008608.1-201ENST00000603910 127 ntBASIC4.23□□□□□ -1.73
RNF39Q9H2S5 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.23□□□□□ -1.73
RNF39Q9H2S5 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
RNF39Q9H2S5 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
RNF39Q9H2S5 MIR3944-201ENST00000581277 108 ntBASIC4.22□□□□□ -1.73
RNF39Q9H2S5 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
RNF39Q9H2S5 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
RNF39Q9H2S5 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.22□□□□□ -1.73
RNF39Q9H2S5 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
RNF39Q9H2S5 SNORD116-16-201ENST00000384533 92 ntBASIC4.21□□□□□ -1.74
RNF39Q9H2S5 MIR1251-201ENST00000408552 70 ntBASIC4.21□□□□□ -1.74
RNF39Q9H2S5 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.21□□□□□ -1.74
RNF39Q9H2S5 RNA5SP481-201ENST00000516814 122 ntBASIC4.21□□□□□ -1.74
RNF39Q9H2S5 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
RNF39Q9H2S5 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 RNU6-1126P-201ENST00000384002 107 ntBASIC4.2□□□□□ -1.74
RNF39Q9H2S5 MIR200C-201ENST00000384980 68 ntBASIC4.2□□□□□ -1.74
RNF39Q9H2S5 SNORA57.3-201ENST00000411095 141 ntBASIC4.2□□□□□ -1.74
RNF39Q9H2S5 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 AC008739.3-201ENST00000603262 127 ntBASIC4.2□□□□□ -1.74
RNF39Q9H2S5 5S_rRNA.15-201ENST00000611169 127 ntBASIC4.2□□□□□ -1.74
RNF39Q9H2S5 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.2□□□□□ -1.74
RNF39Q9H2S5 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
RNF39Q9H2S5 LINC01355-201ENST00000566551 5444 ntBASIC4.19□□□□□ -1.74
RNF39Q9H2S5 MIR29C-201ENST00000385231 88 ntBASIC4.19□□□□□ -1.74
RNF39Q9H2S5 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
RNF39Q9H2S5 RNU1-95P-201ENST00000516357 160 ntBASIC4.19□□□□□ -1.74
RNF39Q9H2S5 RNU1-128P-201ENST00000516704 160 ntBASIC4.19□□□□□ -1.74
RNF39Q9H2S5 SCN1A-220ENST00000641603 12506 ntBASIC4.19□□□□□ -1.74
RNF39Q9H2S5 MAPK10-322ENST00000641485 4530 ntBASIC4.19□□□□□ -1.74
RNF39Q9H2S5 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
RNF39Q9H2S5 AC027290.2-201ENST00000623210 18662 ntBASIC4.19□□□□□ -1.74
RNF39Q9H2S5 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.18□□□□□ -1.74
RNF39Q9H2S5 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.18□□□□□ -1.74
RNF39Q9H2S5 AL138878.1-201ENST00000405131 347 ntBASIC4.18□□□□□ -1.74
RNF39Q9H2S5 MIR548AG2-201ENST00000581228 64 ntBASIC4.18□□□□□ -1.74
RNF39Q9H2S5 MIR4490-201ENST00000582647 84 ntBASIC4.18□□□□□ -1.74
RNF39Q9H2S5 MIR377-201ENST00000362145 69 ntBASIC4.17□□□□□ -1.74
RNF39Q9H2S5 RNU6-924P-201ENST00000362926 108 ntBASIC4.17□□□□□ -1.74
RNF39Q9H2S5 SNORD46.1-201ENST00000364139 104 ntBASIC4.17□□□□□ -1.74
RNF39Q9H2S5 SNORA31.15-201ENST00000516771 132 ntBASIC4.17□□□□□ -1.74
RNF39Q9H2S5 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
RNF39Q9H2S5 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
RNF39Q9H2S5 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
RNF39Q9H2S5 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
RNF39Q9H2S5 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
RNF39Q9H2S5 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
RNF39Q9H2S5 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC4.16□□□□□ -1.74
RNF39Q9H2S5 MIR208A-201ENST00000362287 71 ntBASIC4.16□□□□□ -1.74
RNF39Q9H2S5 SNORA9.1-201ENST00000362412 131 ntBASIC4.16□□□□□ -1.74
RNF39Q9H2S5 MIR199A2-201ENST00000385289 110 ntBASIC4.16□□□□□ -1.74
RNF39Q9H2S5 RNU2-37P-201ENST00000410695 177 ntBASIC4.16□□□□□ -1.74
RNF39Q9H2S5 RNA5SP146-201ENST00000410743 123 ntBASIC4.16□□□□□ -1.74
RNF39Q9H2S5 AC067940.1-201ENST00000458411 300 ntBASIC4.16□□□□□ -1.74
RNF39Q9H2S5 RNU7-185P-201ENST00000459215 60 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms