Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 RNA5SP364-201ENST00000516938 78 ntBASIC2.31□□□□□ -2.04
ERCC3P19447 SNRPGP19-201ENST00000603826 189 ntBASIC2.31□□□□□ -2.04
ERCC3P19447 GHRLOS.1-201ENST00000610995 70 ntBASIC2.31□□□□□ -2.04
ERCC3P19447 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
ERCC3P19447 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
ERCC3P19447 RNU6-508P-201ENST00000363231 103 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 SNORD50.2-201ENST00000365465 70 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 SNORD41-201ENST00000386967 70 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 RPS29P29-201ENST00000456396 171 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 RNU7-96P-201ENST00000459535 64 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 SCARNA15-202ENST00000516881 127 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 MIR3910-1-201ENST00000580936 111 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 AL022345.2-201ENST00000606307 135 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 AC008133.2-201ENST00000624540 351 ntBASIC2.3□□□□□ -2.04
ERCC3P19447 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.3□□□□□ -2.04
ERCC3P19447 Y_RNA.294-201ENST00000364916 102 ntBASIC2.29□□□□□ -2.04
ERCC3P19447 SNORA40.18-201ENST00000391200 128 ntBASIC2.29□□□□□ -2.04
ERCC3P19447 RNA5SP182-201ENST00000516064 82 ntBASIC2.29□□□□□ -2.04
ERCC3P19447 U7.2-201ENST00000607576 63 ntBASIC2.29□□□□□ -2.04
ERCC3P19447 AC091932.4-201ENST00000623386 200 ntBASIC2.29□□□□□ -2.04
ERCC3P19447 AP001340.1-201ENST00000624405 217 ntBASIC2.29□□□□□ -2.04
ERCC3P19447 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
ERCC3P19447 Y_RNA.140-201ENST00000363474 103 ntBASIC2.28□□□□□ -2.04
ERCC3P19447 Y_RNA.586-201ENST00000391146 98 ntBASIC2.28□□□□□ -2.04
ERCC3P19447 RNA5SP338-201ENST00000410495 85 ntBASIC2.28□□□□□ -2.04
ERCC3P19447 RNU7-53P-201ENST00000516705 60 ntBASIC2.28□□□□□ -2.04
ERCC3P19447 RNU6-971P-201ENST00000516920 106 ntBASIC2.28□□□□□ -2.04
ERCC3P19447 RNU6-789P-201ENST00000517105 102 ntBASIC2.28□□□□□ -2.04
ERCC3P19447 RNU2-60P-201ENST00000517290 128 ntBASIC2.28□□□□□ -2.04
ERCC3P19447 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.28□□□□□ -2.04
ERCC3P19447 MIR3935-201ENST00000583472 104 ntBASIC2.28□□□□□ -2.04
ERCC3P19447 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
ERCC3P19447 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
ERCC3P19447 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.27□□□□□ -2.05
ERCC3P19447 MIR302D-201ENST00000362275 68 ntBASIC2.27□□□□□ -2.05
ERCC3P19447 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
ERCC3P19447 AL603914.1-201ENST00000401964 204 ntBASIC2.27□□□□□ -2.05
ERCC3P19447 RNU6-998P-201ENST00000515894 101 ntBASIC2.27□□□□□ -2.05
ERCC3P19447 RNU7-41P-201ENST00000515917 61 ntBASIC2.27□□□□□ -2.05
ERCC3P19447 MIR4422-201ENST00000581938 83 ntBASIC2.27□□□□□ -2.05
ERCC3P19447 AC012493.3-201ENST00000604494 112 ntBASIC2.27□□□□□ -2.05
ERCC3P19447 AC132825.6-201ENST00000638861 357 ntBASIC2.27□□□□□ -2.05
ERCC3P19447 AL442644.1-201ENST00000454390 3105 ntBASIC2.26□□□□□ -2.05
ERCC3P19447 Y_RNA.537-201ENST00000384626 109 ntBASIC2.26□□□□□ -2.05
ERCC3P19447 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.26□□□□□ -2.05
ERCC3P19447 AL445685.2-201ENST00000422551 342 ntBASIC2.26□□□□□ -2.05
ERCC3P19447 RNU1-40P-201ENST00000516816 164 ntBASIC2.26□□□□□ -2.05
ERCC3P19447 RNU1-97P-201ENST00000516872 164 ntBASIC2.26□□□□□ -2.05
ERCC3P19447 MIR5089-201ENST00000580047 84 ntBASIC2.26□□□□□ -2.05
ERCC3P19447 AP000942.3-201ENST00000603702 160 ntBASIC2.26□□□□□ -2.05
ERCC3P19447 MIR4251-201ENST00000635819 61 ntBASIC2.26□□□□□ -2.05
ERCC3P19447 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
ERCC3P19447 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
ERCC3P19447 RNU4-16P-201ENST00000364737 141 ntBASIC2.25□□□□□ -2.05
ERCC3P19447 RNU6-690P-201ENST00000365242 106 ntBASIC2.25□□□□□ -2.05
ERCC3P19447 MIR539-201ENST00000365690 78 ntBASIC2.25□□□□□ -2.05
ERCC3P19447 AC027119.1-201ENST00000440877 241 ntBASIC2.25□□□□□ -2.05
ERCC3P19447 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
ERCC3P19447 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
ERCC3P19447 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.25□□□□□ -2.05
ERCC3P19447 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
ERCC3P19447 RNU1-78P-201ENST00000391248 165 ntBASIC2.23□□□□□ -2.05
ERCC3P19447 MIR934-201ENST00000401241 83 ntBASIC2.23□□□□□ -2.05
ERCC3P19447 RPL30P7-201ENST00000479312 323 ntBASIC2.23□□□□□ -2.05
ERCC3P19447 RN7SL274P-201ENST00000492268 272 ntBASIC2.23□□□□□ -2.05
ERCC3P19447 RNA5SP236-201ENST00000516169 116 ntBASIC2.23□□□□□ -2.05
ERCC3P19447 RNU6-235P-201ENST00000362644 107 ntBASIC2.22□□□□□ -2.05
ERCC3P19447 RNY1P6-201ENST00000384193 109 ntBASIC2.22□□□□□ -2.05
ERCC3P19447 AC003989.2-201ENST00000440224 169 ntBASIC2.22□□□□□ -2.05
ERCC3P19447 RNU7-45P-201ENST00000459460 63 ntBASIC2.22□□□□□ -2.05
ERCC3P19447 AC025033.1-201ENST00000463883 194 ntBASIC2.22□□□□□ -2.05
ERCC3P19447 RNU6-240P-201ENST00000516098 97 ntBASIC2.22□□□□□ -2.05
ERCC3P19447 Y_RNA.676-201ENST00000516393 96 ntBASIC2.22□□□□□ -2.05
ERCC3P19447 HSPE1P19-201ENST00000603327 295 ntBASIC2.22□□□□□ -2.05
ERCC3P19447 AL096861.1-201ENST00000610899 123 ntBASIC2.22□□□□□ -2.05
ERCC3P19447 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
ERCC3P19447 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
ERCC3P19447 SNORA25.3-201ENST00000363205 127 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 Y_RNA.114-201ENST00000363265 113 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 Y_RNA.338-201ENST00000365320 114 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 SNORA19-201ENST00000384737 128 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 SUMO2P12-201ENST00000405924 140 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 RNA5SP445-201ENST00000515889 115 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 RN7SKP88-201ENST00000516847 250 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 AL512310.8-201ENST00000550183 120 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 MIR3192-201ENST00000584920 77 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 7SK.8-201ENST00000612110 250 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 7SK.11-201ENST00000615477 250 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 AL121890.5-201ENST00000620848 304 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 7SK.13-201ENST00000622040 250 ntBASIC2.21□□□□□ -2.06
ERCC3P19447 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.2□□□□□ -2.06
ERCC3P19447 snoU13.16-201ENST00000459350 104 ntBASIC2.2□□□□□ -2.06
ERCC3P19447 RNU2-13P-201ENST00000515909 113 ntBASIC2.2□□□□□ -2.06
ERCC3P19447 MIR3664-201ENST00000579074 99 ntBASIC2.2□□□□□ -2.06
ERCC3P19447 MIR3121-201ENST00000579680 77 ntBASIC2.2□□□□□ -2.06
ERCC3P19447 MIR4285-201ENST00000581001 85 ntBASIC2.2□□□□□ -2.06
ERCC3P19447 RNA5SP48-201ENST00000363969 126 ntBASIC2.19□□□□□ -2.06
ERCC3P19447 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
ERCC3P19447 SNORA17.3-201ENST00000391159 129 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 148.1 ms