Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNA5SP167-201ENST00000365461 116 ntBASIC5.31□□□□□ -1.56
MSH5O43196 MT-TF-201ENST00000387314 71 ntBASIC5.31□□□□□ -1.56
MSH5O43196 RNU6-1077P-201ENST00000410506 102 ntBASIC5.31□□□□□ -1.56
MSH5O43196 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC5.31□□□□□ -1.56
MSH5O43196 RN7SL93P-201ENST00000463035 293 ntBASIC5.31□□□□□ -1.56
MSH5O43196 RNU7-174P-201ENST00000516248 59 ntBASIC5.31□□□□□ -1.56
MSH5O43196 AC026403.1-201ENST00000518938 295 ntBASIC5.31□□□□□ -1.56
MSH5O43196 U7.8-201ENST00000619968 63 ntBASIC5.31□□□□□ -1.56
MSH5O43196 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSH5O43196 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSH5O43196 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSH5O43196 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC5.3□□□□□ -1.56
MSH5O43196 RNA5SP51-201ENST00000364750 119 ntBASIC5.3□□□□□ -1.56
MSH5O43196 MIR634-201ENST00000385208 97 ntBASIC5.3□□□□□ -1.56
MSH5O43196 SNORD93-201ENST00000408813 74 ntBASIC5.3□□□□□ -1.56
MSH5O43196 MIR5094-201ENST00000578766 85 ntBASIC5.3□□□□□ -1.56
MSH5O43196 AC110741.2-201ENST00000605278 268 ntBASIC5.3□□□□□ -1.56
MSH5O43196 AC021146.9-201ENST00000512503 156 ntBASIC5.29□□□□□ -1.56
MSH5O43196 RNU1-95P-201ENST00000516357 160 ntBASIC5.29□□□□□ -1.56
MSH5O43196 RNU1-128P-201ENST00000516704 160 ntBASIC5.29□□□□□ -1.56
MSH5O43196 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC5.29□□□□□ -1.56
MSH5O43196 uc_338.6-201ENST00000613544 171 ntBASIC5.29□□□□□ -1.56
MSH5O43196 UCA1.1-201ENST00000620952 75 ntBASIC5.29□□□□□ -1.56
MSH5O43196 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSH5O43196 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5.29□□□□□ -1.56
MSH5O43196 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
MSH5O43196 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.28□□□□□ -1.56
MSH5O43196 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSH5O43196 SNORA5A-201ENST00000384111 134 ntBASIC5.28□□□□□ -1.56
MSH5O43196 RNU6ATAC3P-201ENST00000387974 126 ntBASIC5.28□□□□□ -1.56
MSH5O43196 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.28□□□□□ -1.56
MSH5O43196 RNA5SP246-201ENST00000458909 119 ntBASIC5.28□□□□□ -1.56
MSH5O43196 RN7SL323P-201ENST00000494712 295 ntBASIC5.28□□□□□ -1.56
MSH5O43196 RNA5SP164-201ENST00000516533 110 ntBASIC5.28□□□□□ -1.56
MSH5O43196 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC5.28□□□□□ -1.56
MSH5O43196 MIR7110-201ENST00000612638 86 ntBASIC5.28□□□□□ -1.56
MSH5O43196 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
MSH5O43196 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH5O43196 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
MSH5O43196 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH5O43196 SNORA40.17-201ENST00000517256 115 ntBASIC5.27□□□□□ -1.57
MSH5O43196 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC5.27□□□□□ -1.57
MSH5O43196 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH5O43196 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSH5O43196 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSH5O43196 SNORA25B-201ENST00000365507 128 ntBASIC5.26□□□□□ -1.57
MSH5O43196 SNORA40B-201ENST00000385573 128 ntBASIC5.26□□□□□ -1.57
MSH5O43196 SNORA26.7-201ENST00000391288 122 ntBASIC5.26□□□□□ -1.57
MSH5O43196 HMGN2P7-201ENST00000456186 273 ntBASIC5.26□□□□□ -1.57
MSH5O43196 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC5.26□□□□□ -1.57
MSH5O43196 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSH5O43196 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSH5O43196 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSH5O43196 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSH5O43196 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
MSH5O43196 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSH5O43196 RPS29P4-201ENST00000414733 161 ntBASIC5.25□□□□□ -1.57
MSH5O43196 RNU7-62P-201ENST00000458856 62 ntBASIC5.25□□□□□ -1.57
MSH5O43196 SNORA31.11-201ENST00000516528 139 ntBASIC5.25□□□□□ -1.57
MSH5O43196 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
MSH5O43196 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSH5O43196 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.24□□□□□ -1.57
MSH5O43196 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC5.24□□□□□ -1.57
MSH5O43196 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSH5O43196 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSH5O43196 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSH5O43196 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.23□□□□□ -1.57
MSH5O43196 MIR7515-201ENST00000637837 67 ntBASIC5.23□□□□□ -1.57
MSH5O43196 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSH5O43196 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSH5O43196 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSH5O43196 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSH5O43196 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC5.22□□□□□ -1.57
MSH5O43196 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSH5O43196 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSH5O43196 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
MSH5O43196 MIR218-2-201ENST00000385006 110 ntBASIC5.22□□□□□ -1.57
MSH5O43196 AC006011.1-201ENST00000442758 349 ntBASIC5.22□□□□□ -1.57
MSH5O43196 AC006064.5-201ENST00000541782 248 ntBASIC5.22□□□□□ -1.57
MSH5O43196 MIR6868-201ENST00000611215 58 ntBASIC5.22□□□□□ -1.57
MSH5O43196 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.22□□□□□ -1.57
MSH5O43196 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSH5O43196 MIR4644-201ENST00000579929 84 ntBASIC5.21□□□□□ -1.58
MSH5O43196 MIR7151-201ENST00000617477 60 ntBASIC5.21□□□□□ -1.58
MSH5O43196 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.21□□□□□ -1.58
MSH5O43196 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC5.21□□□□□ -1.58
MSH5O43196 OTUD4P1-201ENST00000237841 3067 ntBASIC5.21□□□□□ -1.58
MSH5O43196 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSH5O43196 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
MSH5O43196 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.2□□□□□ -1.58
MSH5O43196 RNU6-810P-201ENST00000364001 107 ntBASIC5.2□□□□□ -1.58
MSH5O43196 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.2□□□□□ -1.58
MSH5O43196 U3.45-201ENST00000607547 219 ntBASIC5.2□□□□□ -1.58
MSH5O43196 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSH5O43196 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC5.19□□□□□ -1.58
MSH5O43196 RNU6-990P-201ENST00000364385 104 ntBASIC5.19□□□□□ -1.58
MSH5O43196 RNU1-36P-201ENST00000365130 165 ntBASIC5.19□□□□□ -1.58
MSH5O43196 RNVU1-14-201ENST00000384770 164 ntBASIC5.19□□□□□ -1.58
MSH5O43196 MIR183-201ENST00000384958 110 ntBASIC5.19□□□□□ -1.58
MSH5O43196 RNU7-170P-201ENST00000459303 61 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 200.9 ms