Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC5□□□□□ -1.61
NCBP3Q53F19 MIR9-2-201ENST00000384838 87 ntBASIC4.99□□□□□ -1.61
NCBP3Q53F19 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
NCBP3Q53F19 RNU6-466P-201ENST00000391224 103 ntBASIC4.99□□□□□ -1.61
NCBP3Q53F19 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
NCBP3Q53F19 RN7SL542P-201ENST00000467147 294 ntBASIC4.99□□□□□ -1.61
NCBP3Q53F19 AC104027.1-201ENST00000521887 300 ntBASIC4.99□□□□□ -1.61
NCBP3Q53F19 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.99□□□□□ -1.61
NCBP3Q53F19 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC4.99□□□□□ -1.61
NCBP3Q53F19 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
NCBP3Q53F19 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
NCBP3Q53F19 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
NCBP3Q53F19 RNA5SP51-201ENST00000364750 119 ntBASIC4.98□□□□□ -1.61
NCBP3Q53F19 RN7SL323P-201ENST00000494712 295 ntBASIC4.98□□□□□ -1.61
NCBP3Q53F19 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.98□□□□□ -1.61
NCBP3Q53F19 MIR486-1-201ENST00000612171 68 ntBASIC4.98□□□□□ -1.61
NCBP3Q53F19 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
NCBP3Q53F19 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
NCBP3Q53F19 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
NCBP3Q53F19 RNA5SP424-201ENST00000390988 115 ntBASIC4.97□□□□□ -1.61
NCBP3Q53F19 HMGN2P3-201ENST00000433603 273 ntBASIC4.97□□□□□ -1.61
NCBP3Q53F19 HMGN2P5-201ENST00000436882 273 ntBASIC4.97□□□□□ -1.61
NCBP3Q53F19 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
NCBP3Q53F19 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
NCBP3Q53F19 AC087499.8-201ENST00000578406 226 ntBASIC4.96□□□□□ -1.62
NCBP3Q53F19 AC244205.2-202ENST00000635781 342 ntBASIC4.96□□□□□ -1.62
NCBP3Q53F19 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NCBP3Q53F19 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
NCBP3Q53F19 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
NCBP3Q53F19 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
NCBP3Q53F19 RNU6-330P-201ENST00000363015 107 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 RNU1-89P-201ENST00000384592 164 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 AC244023.1-201ENST00000426884 112 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 AC245517.4-201ENST00000448601 281 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 snoU13.2-201ENST00000459201 104 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 TRBV12-2-201ENST00000489763 344 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 RNU7-41P-201ENST00000515917 61 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 RNA5SP481-201ENST00000516814 122 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 AC242498.1-201ENST00000604134 111 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 AL096861.1-201ENST00000610899 123 ntBASIC4.95□□□□□ -1.62
NCBP3Q53F19 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.95□□□□□ -1.62
NCBP3Q53F19 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
NCBP3Q53F19 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
NCBP3Q53F19 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.94□□□□□ -1.62
NCBP3Q53F19 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.94□□□□□ -1.62
NCBP3Q53F19 AC005520.4-201ENST00000604337 90 ntBASIC4.94□□□□□ -1.62
NCBP3Q53F19 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.93□□□□□ -1.62
NCBP3Q53F19 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.93□□□□□ -1.62
NCBP3Q53F19 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
NCBP3Q53F19 RNU6-112P-201ENST00000363599 104 ntBASIC4.93□□□□□ -1.62
NCBP3Q53F19 MIR588-201ENST00000384900 83 ntBASIC4.93□□□□□ -1.62
NCBP3Q53F19 AC009474.2-201ENST00000451383 136 ntBASIC4.93□□□□□ -1.62
NCBP3Q53F19 SNORA59A-201ENST00000459326 152 ntBASIC4.93□□□□□ -1.62
NCBP3Q53F19 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
NCBP3Q53F19 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
NCBP3Q53F19 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
NCBP3Q53F19 MIR1283-2-201ENST00000408621 87 ntBASIC4.92□□□□□ -1.62
NCBP3Q53F19 RNA5SP492-201ENST00000411330 114 ntBASIC4.92□□□□□ -1.62
NCBP3Q53F19 snoU13.17-201ENST00000458802 104 ntBASIC4.92□□□□□ -1.62
NCBP3Q53F19 RNU7-26P-201ENST00000458980 63 ntBASIC4.92□□□□□ -1.62
NCBP3Q53F19 AC092185.1-201ENST00000491371 97 ntBASIC4.92□□□□□ -1.62
NCBP3Q53F19 RNU6-579P-201ENST00000516879 102 ntBASIC4.92□□□□□ -1.62
NCBP3Q53F19 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC4.92□□□□□ -1.62
NCBP3Q53F19 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.92□□□□□ -1.62
NCBP3Q53F19 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
NCBP3Q53F19 Y_RNA.36-201ENST00000362602 112 ntBASIC4.91□□□□□ -1.62
NCBP3Q53F19 MIR30B-201ENST00000384850 88 ntBASIC4.91□□□□□ -1.62
NCBP3Q53F19 MIR518E-201ENST00000385252 88 ntBASIC4.91□□□□□ -1.62
NCBP3Q53F19 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
NCBP3Q53F19 MIR5685-201ENST00000579080 79 ntBASIC4.91□□□□□ -1.62
NCBP3Q53F19 RNU6-499P-201ENST00000365615 107 ntBASIC4.9□□□□□ -1.63
NCBP3Q53F19 RNA5SP171-201ENST00000391071 115 ntBASIC4.9□□□□□ -1.63
NCBP3Q53F19 RNA5SP208-201ENST00000516156 78 ntBASIC4.9□□□□□ -1.63
NCBP3Q53F19 MIR3158-1-201ENST00000583596 81 ntBASIC4.9□□□□□ -1.63
NCBP3Q53F19 RNU6-957P-201ENST00000363652 99 ntBASIC4.89□□□□□ -1.63
NCBP3Q53F19 SNORA48.1-201ENST00000390879 135 ntBASIC4.89□□□□□ -1.63
NCBP3Q53F19 SNORA67.7-201ENST00000516664 135 ntBASIC4.89□□□□□ -1.63
NCBP3Q53F19 SNORA4-201ENST00000584302 138 ntBASIC4.89□□□□□ -1.63
NCBP3Q53F19 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
NCBP3Q53F19 RNU7-106P-201ENST00000459514 67 ntBASIC4.88□□□□□ -1.63
NCBP3Q53F19 RNA5SP143-201ENST00000516936 115 ntBASIC4.88□□□□□ -1.63
NCBP3Q53F19 AP000553.6-201ENST00000641242 118 ntBASIC4.88□□□□□ -1.63
NCBP3Q53F19 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC4.88□□□□□ -1.63
NCBP3Q53F19 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NCBP3Q53F19 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NCBP3Q53F19 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
NCBP3Q53F19 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
NCBP3Q53F19 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
NCBP3Q53F19 Y_RNA.371-201ENST00000365591 113 ntBASIC4.87□□□□□ -1.63
NCBP3Q53F19 RNU6-630P-201ENST00000391258 106 ntBASIC4.87□□□□□ -1.63
NCBP3Q53F19 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.87□□□□□ -1.63
NCBP3Q53F19 RNU6-154P-201ENST00000384306 106 ntBASIC4.86□□□□□ -1.63
NCBP3Q53F19 MIR942-201ENST00000401111 86 ntBASIC4.86□□□□□ -1.63
NCBP3Q53F19 RNU6ATAC-201ENST00000408749 126 ntBASIC4.86□□□□□ -1.63
NCBP3Q53F19 AC105272.1-201ENST00000438604 198 ntBASIC4.86□□□□□ -1.63
NCBP3Q53F19 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.86□□□□□ -1.63
NCBP3Q53F19 AC121758.2-201ENST00000553271 193 ntBASIC4.86□□□□□ -1.63
NCBP3Q53F19 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC4.86□□□□□ -1.63
NCBP3Q53F19 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC4.86□□□□□ -1.63
NCBP3Q53F19 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms