Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNU7-70P-201ENST00000516941 66 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 AL096840.1-201ENST00000603287 93 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
COL6A1P12109 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
COL6A1P12109 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
COL6A1P12109 Y_RNA.35-201ENST00000362601 101 ntBASIC2.33□□□□□ -2.04
COL6A1P12109 SNORD115-28-201ENST00000363931 81 ntBASIC2.33□□□□□ -2.04
COL6A1P12109 RNU6-268P-201ENST00000364174 107 ntBASIC2.33□□□□□ -2.04
COL6A1P12109 RNU6-1019P-201ENST00000364424 107 ntBASIC2.33□□□□□ -2.04
COL6A1P12109 SNORA2.2-201ENST00000365473 135 ntBASIC2.33□□□□□ -2.04
COL6A1P12109 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.33□□□□□ -2.04
COL6A1P12109 Y_RNA.528-201ENST00000384575 108 ntBASIC2.32□□□□□ -2.04
COL6A1P12109 MIR548A1-201ENST00000385041 97 ntBASIC2.32□□□□□ -2.04
COL6A1P12109 RNA5SP109-201ENST00000391010 116 ntBASIC2.32□□□□□ -2.04
COL6A1P12109 AC019129.1-201ENST00000403786 261 ntBASIC2.32□□□□□ -2.04
COL6A1P12109 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.32□□□□□ -2.04
COL6A1P12109 RNA5SP501-201ENST00000410990 112 ntBASIC2.32□□□□□ -2.04
COL6A1P12109 RNA5SP445-201ENST00000515889 115 ntBASIC2.32□□□□□ -2.04
COL6A1P12109 RNU7-25P-201ENST00000516544 62 ntBASIC2.32□□□□□ -2.04
COL6A1P12109 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.32□□□□□ -2.04
COL6A1P12109 AL137067.1-201ENST00000615933 120 ntBASIC2.32□□□□□ -2.04
COL6A1P12109 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.32□□□□□ -2.04
COL6A1P12109 Y_RNA.118-201ENST00000363300 101 ntBASIC2.31□□□□□ -2.04
COL6A1P12109 Y_RNA.547-201ENST00000384654 119 ntBASIC2.31□□□□□ -2.04
COL6A1P12109 RNU6-440P-201ENST00000390882 105 ntBASIC2.31□□□□□ -2.04
COL6A1P12109 HMGN2P38-201ENST00000423806 265 ntBASIC2.31□□□□□ -2.04
COL6A1P12109 AL606517.2-201ENST00000442855 241 ntBASIC2.31□□□□□ -2.04
COL6A1P12109 STAG3L5P-204ENST00000443759 179 ntBASIC2.31□□□□□ -2.04
COL6A1P12109 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.31□□□□□ -2.04
COL6A1P12109 MIR8054-201ENST00000620877 86 ntBASIC2.31□□□□□ -2.04
COL6A1P12109 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
COL6A1P12109 MIR378A-201ENST00000362177 66 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 Y_RNA.37-201ENST00000362606 108 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 SNORD38C-201ENST00000384381 69 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 RNU6-950P-201ENST00000384651 107 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.3□□□□□ -2.04
COL6A1P12109 RPS26P48-201ENST00000491713 339 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 AC090255.1-201ENST00000495779 349 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 RNU6-412P-201ENST00000516434 106 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 IGKV1-22-201ENST00000524313 326 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 MIR4713-201ENST00000582691 75 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 MIR8070-201ENST00000616510 88 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 AC022513.1-201ENST00000624512 117 ntBASIC2.3□□□□□ -2.04
COL6A1P12109 RNU6-163P-201ENST00000384396 106 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 MIR499A-201ENST00000384903 122 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
COL6A1P12109 SNORA40.18-201ENST00000391200 128 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 RN7SKP200-201ENST00000410564 320 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 SNRPGP14-201ENST00000435400 219 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 AC087499.4-201ENST00000448505 178 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 COX6CP6-201ENST00000490840 228 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 AC084364.2-201ENST00000546924 395 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 AC015726.2-201ENST00000620112 122 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 MIR376A2-201ENST00000636782 80 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 ZNF720P1-201ENST00000562403 1939 ntBASIC2.29□□□□□ -2.04
COL6A1P12109 ICE2P2-201ENST00000483823 2787 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 RNU6-457P-201ENST00000363999 107 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 Y_RNA.366-201ENST00000365540 102 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 MIR570-201ENST00000384917 97 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 BTF3P4-201ENST00000418852 495 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 CALM2P4-201ENST00000430810 426 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 SNORA44.1-201ENST00000517031 108 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 MIR4679-2-201ENST00000578358 77 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 MIR5094-201ENST00000578766 85 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 MIR3613-201ENST00000579844 87 ntBASIC2.28□□□□□ -2.04
COL6A1P12109 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
COL6A1P12109 MIR337-201ENST00000362281 93 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 RNU1-133P-201ENST00000364867 167 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 RNU6-690P-201ENST00000365242 106 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 RNU6-147P-201ENST00000383983 107 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 AL034345.1-201ENST00000407768 123 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 RNU7-80P-201ENST00000459562 61 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 RNU6-240P-201ENST00000516098 97 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 SNORA18.7-201ENST00000516910 131 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 MIR4778-201ENST00000577635 80 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 MIR3683-201ENST00000580847 82 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 Y_RNA.783-201ENST00000613546 102 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 AC027279.3-201ENST00000625055 122 ntBASIC2.27□□□□□ -2.05
COL6A1P12109 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
COL6A1P12109 Y_RNA.454-201ENST00000384224 113 ntBASIC2.26□□□□□ -2.05
COL6A1P12109 SNORA48.1-201ENST00000390879 135 ntBASIC2.26□□□□□ -2.05
COL6A1P12109 RNU2-40P-201ENST00000410833 196 ntBASIC2.26□□□□□ -2.05
COL6A1P12109 AC114811.1-201ENST00000507207 168 ntBASIC2.26□□□□□ -2.05
COL6A1P12109 SNORD36C-201ENST00000516733 66 ntBASIC2.26□□□□□ -2.05
COL6A1P12109 AP003484.1-201ENST00000530974 250 ntBASIC2.26□□□□□ -2.05
COL6A1P12109 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.26□□□□□ -2.05
COL6A1P12109 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL6A1P12109 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL6A1P12109 RNY1P10-201ENST00000363268 113 ntBASIC2.25□□□□□ -2.05
COL6A1P12109 Y_RNA.440-201ENST00000384120 114 ntBASIC2.25□□□□□ -2.05
COL6A1P12109 RNU6-424P-201ENST00000384367 105 ntBASIC2.25□□□□□ -2.05
COL6A1P12109 MIR759-201ENST00000390224 91 ntBASIC2.25□□□□□ -2.05
COL6A1P12109 AL627390.1-201ENST00000396055 340 ntBASIC2.25□□□□□ -2.05
COL6A1P12109 AC007012.1-201ENST00000567192 175 ntBASIC2.25□□□□□ -2.05
COL6A1P12109 AL359821.1-201ENST00000605519 182 ntBASIC2.25□□□□□ -2.05
COL6A1P12109 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.25□□□□□ -2.05
COL6A1P12109 RNU6-661P-201ENST00000362409 107 ntBASIC2.24□□□□□ -2.05
COL6A1P12109 Y_RNA.213-201ENST00000364178 111 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms