Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 Y_RNA.354-201ENST00000365448 111 ntBASIC4.14□□□□□ -1.75
TRIM35Q9UPQ4 MIR516B2-201ENST00000385190 85 ntBASIC4.14□□□□□ -1.75
TRIM35Q9UPQ4 HSPE1P26-201ENST00000405341 275 ntBASIC4.14□□□□□ -1.75
TRIM35Q9UPQ4 HMGN1P18-201ENST00000457642 277 ntBASIC4.14□□□□□ -1.75
TRIM35Q9UPQ4 SNORA18.5-201ENST00000516616 101 ntBASIC4.14□□□□□ -1.75
TRIM35Q9UPQ4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC4.14□□□□□ -1.75
TRIM35Q9UPQ4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC4.14□□□□□ -1.75
TRIM35Q9UPQ4 MIR7157-201ENST00000635801 60 ntBASIC4.14□□□□□ -1.75
TRIM35Q9UPQ4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC4.14□□□□□ -1.75
TRIM35Q9UPQ4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM35Q9UPQ4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM35Q9UPQ4 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.13□□□□□ -1.75
TRIM35Q9UPQ4 RPS29P11-201ENST00000496507 171 ntBASIC4.13□□□□□ -1.75
TRIM35Q9UPQ4 AL356280.1-201ENST00000603614 379 ntBASIC4.13□□□□□ -1.75
TRIM35Q9UPQ4 AP000753.3-201ENST00000604083 169 ntBASIC4.13□□□□□ -1.75
TRIM35Q9UPQ4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.13□□□□□ -1.75
TRIM35Q9UPQ4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM35Q9UPQ4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM35Q9UPQ4 Y_RNA.99-201ENST00000363138 105 ntBASIC4.12□□□□□ -1.75
TRIM35Q9UPQ4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.12□□□□□ -1.75
TRIM35Q9UPQ4 MIR8055-201ENST00000610739 97 ntBASIC4.12□□□□□ -1.75
TRIM35Q9UPQ4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM35Q9UPQ4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 SNORA38.1-201ENST00000364172 131 ntBASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 CD24P4-201ENST00000382840 243 ntBASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 MIR592-201ENST00000384959 97 ntBASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 MIR136-201ENST00000385207 82 ntBASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 S100A11P1-201ENST00000477525 312 ntBASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
TRIM35Q9UPQ4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 MIR452-201ENST00000385020 85 ntBASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 U8.16-201ENST00000391279 133 ntBASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 SNORA11.1-201ENST00000408133 129 ntBASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 RNU4-83P-201ENST00000410863 133 ntBASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 RNU6-1328P-201ENST00000410938 106 ntBASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 MIR3199-1-201ENST00000582434 88 ntBASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 AC067747.1-201ENST00000608026 250 ntBASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
TRIM35Q9UPQ4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 SNORA8.1-201ENST00000384250 140 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 RNU6-160P-201ENST00000384591 107 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 MIR491-201ENST00000384877 84 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 SNORD28B-201ENST00000390993 75 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 RNU6-630P-201ENST00000391258 106 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 AC015818.7-201ENST00000428754 109 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 snoU13.16-201ENST00000459350 104 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 RN7SL442P-201ENST00000473804 320 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 AC008885.1-201ENST00000514930 301 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 RNU6-667P-201ENST00000517186 102 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 MIR548AR-201ENST00000582191 57 ntBASIC4.09□□□□□ -1.75
TRIM35Q9UPQ4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 RNU6-1077P-201ENST00000410506 102 ntBASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 SNORA70.24-201ENST00000517233 118 ntBASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 MIR4536-1-201ENST00000583537 88 ntBASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 SNORD14A-201ENST00000606526 91 ntBASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 UCA1.1-201ENST00000620952 75 ntBASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
TRIM35Q9UPQ4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 AC073325.2-201ENST00000339545 159 ntBASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 SNORA25.4-201ENST00000363666 124 ntBASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 SNORA72.6-201ENST00000384520 129 ntBASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 Y_RNA.537-201ENST00000384626 109 ntBASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 SNORD67-201ENST00000390833 111 ntBASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 AC093850.1-201ENST00000454121 251 ntBASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 MIR622-201ENST00000638396 96 ntBASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TRIM35Q9UPQ4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 Y_RNA.12-201ENST00000362393 112 ntBASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 SNORD56.3-201ENST00000363507 71 ntBASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 SNRPGP12-201ENST00000449481 213 ntBASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 AC133485.1-201ENST00000567176 124 ntBASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 MIR4644-201ENST00000579929 84 ntBASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 AC104996.3-201ENST00000590718 94 ntBASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 GABRG2-229ENST00000641017 3628 ntBASIC4.06□□□□□ -1.76
TRIM35Q9UPQ4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
TRIM35Q9UPQ4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
TRIM35Q9UPQ4 SNORA48.2-201ENST00000390926 124 ntBASIC4.05□□□□□ -1.76
TRIM35Q9UPQ4 RN7SKP220-201ENST00000410611 288 ntBASIC4.05□□□□□ -1.76
TRIM35Q9UPQ4 AC023790.1-201ENST00000482174 347 ntBASIC4.05□□□□□ -1.76
TRIM35Q9UPQ4 RNU7-12P-201ENST00000516030 62 ntBASIC4.05□□□□□ -1.76
TRIM35Q9UPQ4 SNORA31.10-201ENST00000516482 106 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 191.7 ms