Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.37□□□□□ -2.03
NKX3-2P78367 RNA5SP182-201ENST00000516064 82 ntBASIC2.37□□□□□ -2.03
NKX3-2P78367 SNORD36C-201ENST00000516733 66 ntBASIC2.37□□□□□ -2.03
NKX3-2P78367 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.37□□□□□ -2.03
NKX3-2P78367 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
NKX3-2P78367 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
NKX3-2P78367 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
NKX3-2P78367 Y_RNA.37-201ENST00000362606 108 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 SNORD115-28-201ENST00000363931 81 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 RNU6-1019P-201ENST00000364424 107 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 MIR144-201ENST00000384886 86 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 RNU11-3P-201ENST00000391111 133 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 RNU6-938P-201ENST00000411285 103 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 HSPE1P9-201ENST00000440046 311 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 AC114811.1-201ENST00000507207 168 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 RNU7-28P-201ENST00000516759 62 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.36□□□□□ -2.03
NKX3-2P78367 AC069114.2-201ENST00000604699 304 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.36□□□□□ -2.03
NKX3-2P78367 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.36□□□□□ -2.03
NKX3-2P78367 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.36□□□□□ -2.03
NKX3-2P78367 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
NKX3-2P78367 MIRLET7C-201ENST00000362160 84 ntBASIC2.35□□□□□ -2.03
NKX3-2P78367 SNORA2.2-201ENST00000365473 135 ntBASIC2.35□□□□□ -2.03
NKX3-2P78367 RNU6-1189P-201ENST00000383958 107 ntBASIC2.35□□□□□ -2.03
NKX3-2P78367 Y_RNA.410-201ENST00000383992 113 ntBASIC2.35□□□□□ -2.03
NKX3-2P78367 Y_RNA.528-201ENST00000384575 108 ntBASIC2.35□□□□□ -2.03
NKX3-2P78367 MIR1283-2-201ENST00000408621 87 ntBASIC2.35□□□□□ -2.03
NKX3-2P78367 RNA5SP458-201ENST00000516188 119 ntBASIC2.35□□□□□ -2.03
NKX3-2P78367 AL137067.1-201ENST00000615933 120 ntBASIC2.35□□□□□ -2.03
NKX3-2P78367 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
NKX3-2P78367 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.35□□□□□ -2.03
NKX3-2P78367 Y_RNA.336-201ENST00000365307 109 ntBASIC2.34□□□□□ -2.03
NKX3-2P78367 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.34□□□□□ -2.03
NKX3-2P78367 RNU6-240P-201ENST00000516098 97 ntBASIC2.34□□□□□ -2.03
NKX3-2P78367 RNU6-113P-201ENST00000516653 101 ntBASIC2.34□□□□□ -2.03
NKX3-2P78367 AC002984.1-201ENST00000591692 448 ntBASIC2.34□□□□□ -2.03
NKX3-2P78367 MIR6840-201ENST00000611937 71 ntBASIC2.34□□□□□ -2.03
NKX3-2P78367 MIR6845-201ENST00000613182 61 ntBASIC2.34□□□□□ -2.03
NKX3-2P78367 AC015726.2-201ENST00000620112 122 ntBASIC2.34□□□□□ -2.03
NKX3-2P78367 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
NKX3-2P78367 SNORA4.2-201ENST00000365313 147 ntBASIC2.33□□□□□ -2.04
NKX3-2P78367 RNU6-147P-201ENST00000383983 107 ntBASIC2.33□□□□□ -2.04
NKX3-2P78367 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.33□□□□□ -2.04
NKX3-2P78367 RNVU1-2-201ENST00000516326 135 ntBASIC2.33□□□□□ -2.04
NKX3-2P78367 RNA5SP137-201ENST00000516833 135 ntBASIC2.33□□□□□ -2.04
NKX3-2P78367 MIR3613-201ENST00000579844 87 ntBASIC2.33□□□□□ -2.04
NKX3-2P78367 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
NKX3-2P78367 Y_RNA.440-201ENST00000384120 114 ntBASIC2.32□□□□□ -2.04
NKX3-2P78367 RNU6-163P-201ENST00000384396 106 ntBASIC2.32□□□□□ -2.04
NKX3-2P78367 RNU6-880P-201ENST00000384526 107 ntBASIC2.32□□□□□ -2.04
NKX3-2P78367 RPS26P48-201ENST00000491713 339 ntBASIC2.32□□□□□ -2.04
NKX3-2P78367 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
NKX3-2P78367 MIR518A2-201ENST00000384966 87 ntBASIC2.31□□□□□ -2.04
NKX3-2P78367 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.31□□□□□ -2.04
NKX3-2P78367 AP003484.1-201ENST00000530974 250 ntBASIC2.31□□□□□ -2.04
NKX3-2P78367 AP000942.3-201ENST00000603702 160 ntBASIC2.31□□□□□ -2.04
NKX3-2P78367 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.31□□□□□ -2.04
NKX3-2P78367 AC008555.8-201ENST00000623602 2168 ntBASIC2.3□□□□□ -2.04
NKX3-2P78367 RNU6-349P-201ENST00000362402 107 ntBASIC2.3□□□□□ -2.04
NKX3-2P78367 U8.16-201ENST00000391279 133 ntBASIC2.3□□□□□ -2.04
NKX3-2P78367 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.3□□□□□ -2.04
NKX3-2P78367 HMGN2P32-201ENST00000444648 269 ntBASIC2.3□□□□□ -2.04
NKX3-2P78367 MIR5002-201ENST00000584713 97 ntBASIC2.3□□□□□ -2.04
NKX3-2P78367 SNORD14A-201ENST00000606526 91 ntBASIC2.3□□□□□ -2.04
NKX3-2P78367 SNORA28-201ENST00000606769 126 ntBASIC2.3□□□□□ -2.04
NKX3-2P78367 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
NKX3-2P78367 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
NKX3-2P78367 ZNF720P1-201ENST00000562403 1939 ntBASIC2.3□□□□□ -2.04
NKX3-2P78367 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.3□□□□□ -2.04
NKX3-2P78367 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
NKX3-2P78367 AC080100.1-201ENST00000624239 5356 ntBASIC2.29□□□□□ -2.04
NKX3-2P78367 RNU6-1298P-201ENST00000362456 101 ntBASIC2.29□□□□□ -2.04
NKX3-2P78367 SNORA63D-201ENST00000364359 132 ntBASIC2.29□□□□□ -2.04
NKX3-2P78367 RNU1-51P-201ENST00000365345 176 ntBASIC2.29□□□□□ -2.04
NKX3-2P78367 RNA5SP136-201ENST00000410906 107 ntBASIC2.29□□□□□ -2.04
NKX3-2P78367 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.29□□□□□ -2.04
NKX3-2P78367 SNORA18.7-201ENST00000516910 131 ntBASIC2.29□□□□□ -2.04
NKX3-2P78367 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
NKX3-2P78367 RNU6-690P-201ENST00000365242 106 ntBASIC2.28□□□□□ -2.04
NKX3-2P78367 HMGN2P39-201ENST00000398005 273 ntBASIC2.28□□□□□ -2.04
NKX3-2P78367 AC019129.1-201ENST00000403786 261 ntBASIC2.28□□□□□ -2.04
NKX3-2P78367 RN7SKP200-201ENST00000410564 320 ntBASIC2.28□□□□□ -2.04
NKX3-2P78367 AC079804.2-201ENST00000490376 200 ntBASIC2.28□□□□□ -2.04
NKX3-2P78367 RNA5SP168-201ENST00000516642 112 ntBASIC2.28□□□□□ -2.04
NKX3-2P78367 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.28□□□□□ -2.04
NKX3-2P78367 AC007012.1-201ENST00000567192 175 ntBASIC2.28□□□□□ -2.04
NKX3-2P78367 AC027279.3-201ENST00000625055 122 ntBASIC2.28□□□□□ -2.04
NKX3-2P78367 AC005336.3-201ENST00000623833 2679 ntBASIC2.28□□□□□ -2.04
NKX3-2P78367 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.27□□□□□ -2.05
NKX3-2P78367 Y_RNA.351-201ENST00000365436 96 ntBASIC2.27□□□□□ -2.05
NKX3-2P78367 RNU6-424P-201ENST00000384367 105 ntBASIC2.27□□□□□ -2.05
NKX3-2P78367 SNORD38C-201ENST00000384381 69 ntBASIC2.27□□□□□ -2.05
NKX3-2P78367 Y_RNA.494-201ENST00000384432 111 ntBASIC2.27□□□□□ -2.05
NKX3-2P78367 Y_RNA.549-201ENST00000384657 102 ntBASIC2.27□□□□□ -2.05
NKX3-2P78367 MIR570-201ENST00000384917 97 ntBASIC2.27□□□□□ -2.05
NKX3-2P78367 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.27□□□□□ -2.05
NKX3-2P78367 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
NKX3-2P78367 AC069257.2-201ENST00000441819 155 ntBASIC2.27□□□□□ -2.05
NKX3-2P78367 AC087499.4-201ENST00000448505 178 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms