Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 Y_RNA.171-201ENST00000363760 102 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 MIR887-201ENST00000401258 79 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 AL353813.1-201ENST00000440700 253 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 RNU2-11P-201ENST00000459191 187 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 RPPH1-2P-201ENST00000516688 293 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 MIR5680-201ENST00000577577 84 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 AL365361.1-201ENST00000566942 3481 ntBASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.75□□□□□ -1.97
HIF3AQ9Y2N7 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 AL035425.3-201ENST00000564206 4996 ntBASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 RNU1-58P-201ENST00000362413 163 ntBASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 SNORD67-201ENST00000390833 111 ntBASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 POLR2J4-204ENST00000418424 324 ntBASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 RNU7-96P-201ENST00000459535 64 ntBASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 RN7SL633P-201ENST00000488974 297 ntBASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 SCARNA13-201ENST00000516672 275 ntBASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 UBL5P2-201ENST00000583788 219 ntBASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 YPEL5P2-201ENST00000605553 359 ntBASIC2.74□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-1125P-201ENST00000363601 107 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 Y_RNA.190-201ENST00000363964 101 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-1276P-201ENST00000365372 104 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-242P-201ENST00000384359 107 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 SNORA18-201ENST00000384416 132 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-679P-201ENST00000391003 106 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 AL135938.1-201ENST00000443141 297 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 BX510359.1-201ENST00000456973 237 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 RNU7-26P-201ENST00000458980 63 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 RNU7-113P-201ENST00000459273 62 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 Y_RNA.659-201ENST00000515994 113 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-1258P-201ENST00000516911 111 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 ZNF861P-201ENST00000588126 639 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 AC069114.2-201ENST00000604699 304 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 SNORA28-201ENST00000606769 126 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 MIR7112-201ENST00000616126 65 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 MIR8054-201ENST00000620877 86 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 MIR3202-2-201ENST00000635980 79 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 AC108206.1-201ENST00000570186 4159 ntBASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
HIF3AQ9Y2N7 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 AC131280.1-202ENST00000624067 4211 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-1019P-201ENST00000364424 107 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-60P-201ENST00000364792 103 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 U8.9-201ENST00000365667 134 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-616P-201ENST00000384353 107 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-402P-201ENST00000410678 103 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 MRPL35P3-201ENST00000421557 364 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 RN7SL504P-201ENST00000494496 287 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 RPL23AP63-201ENST00000498752 471 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 RNU6-267P-201ENST00000516714 103 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 MIR4777-201ENST00000583710 86 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 AC103810.6-201ENST00000606708 136 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 AC025521.1-201ENST00000621624 286 ntBASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.72□□□□□ -1.97
HIF3AQ9Y2N7 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 MIRLET7C-201ENST00000362160 84 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 SNORA38.1-201ENST00000364172 131 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 Y_RNA.467-201ENST00000384297 102 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 MIR1267-201ENST00000408723 78 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 RNU4-69P-201ENST00000410677 143 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 RN7SKP123-201ENST00000410732 291 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 RNA5SP120-201ENST00000410900 112 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 AC015922.2-201ENST00000435593 184 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 MIR3126-201ENST00000577443 74 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 MIR5004-201ENST00000579078 107 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 AC005000.2-201ENST00000605468 310 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 AC022202.1-201ENST00000613515 211 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 AC007318.2-201ENST00000620999 243 ntBASIC2.71□□□□□ -1.98
HIF3AQ9Y2N7 AL161431.1-201ENST00000618966 4205 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 MIR22-201ENST00000362190 85 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-34-201ENST00000362441 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-12-201ENST00000362583 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-29-201ENST00000362834 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-9-201ENST00000362912 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-21-201ENST00000362963 81 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-14-201ENST00000363090 81 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-13-201ENST00000363358 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-41-201ENST00000363608 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-11-201ENST00000363616 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-5-201ENST00000363633 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-39-201ENST00000363694 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-4-201ENST00000363810 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-16-201ENST00000363887 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-6-201ENST00000363942 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-42-201ENST00000364273 82 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-15-201ENST00000364809 81 ntBASIC2.7□□□□□ -1.98
HIF3AQ9Y2N7 SNORD115-1-201ENST00000364961 82 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 173.6 ms