Protein–RNA interactions for Protein: Q9UJU5

FOXD3, Forkhead box protein D3, humanhuman

Predicted RBP Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXD3Q9UJU5 RN7SL75P-201ENST00000461926 281 ntBASIC2.71□□□□□ -1.98
FOXD3Q9UJU5 MIR3163-201ENST00000581592 73 ntBASIC2.71□□□□□ -1.98
FOXD3Q9UJU5 ELOCP29-201ENST00000588193 334 ntBASIC2.71□□□□□ -1.98
FOXD3Q9UJU5 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
FOXD3Q9UJU5 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
FOXD3Q9UJU5 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 AL161431.1-201ENST00000618966 4205 ntBASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 RNU6-1014P-201ENST00000383940 103 ntBASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 RN7SL20P-201ENST00000488827 297 ntBASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 AC021506.2-201ENST00000612354 169 ntBASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 AC106754.2-201ENST00000623006 233 ntBASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXD3Q9UJU5 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 MIR342-201ENST00000362212 99 ntBASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 SNORA63.5-201ENST00000363548 123 ntBASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 MIR660-201ENST00000385235 97 ntBASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 AL590004.2-201ENST00000404787 371 ntBASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 EEF1A1P41-201ENST00000414667 207 ntBASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 RPL39P34-201ENST00000477141 156 ntBASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 RNU7-181P-201ENST00000517234 74 ntBASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXD3Q9UJU5 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 RNU6-1255P-201ENST00000363434 112 ntBASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 RNU6-1113P-201ENST00000384348 107 ntBASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 MIR548D2-201ENST00000384955 97 ntBASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 UQCRHP3-201ENST00000451503 251 ntBASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 RPL12P50-201ENST00000603116 116 ntBASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 AC096644.4-201ENST00000563417 2912 ntBASIC2.68□□□□□ -1.98
FOXD3Q9UJU5 Y_RNA.328-201ENST00000365208 113 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 RNU6-756P-201ENST00000383997 107 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 RNA5SP274-201ENST00000410484 108 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 AL022718.1-201ENST00000412004 84 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 RNU6-893P-201ENST00000458841 100 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 RNU2-11P-201ENST00000459191 187 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 UBL5P3-201ENST00000475112 231 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 Y_RNA.677-201ENST00000516401 85 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 RNU2-35P-201ENST00000516446 142 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 RNA5SP281-201ENST00000516504 135 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 RNA5SP367-201ENST00000516557 118 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 MIR4529-201ENST00000578110 78 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 SNORD14A-201ENST00000606526 91 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 AC021613.1-201ENST00000623880 111 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
FOXD3Q9UJU5 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 RNU4-16P-201ENST00000364737 141 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 Y_RNA.370-201ENST00000365589 108 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 MIR516B2-201ENST00000385190 85 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 MT-TI-201ENST00000387365 69 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 RNA5SP144-201ENST00000410846 116 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 PGBD4P5-201ENST00000445958 426 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 AC099513.1-201ENST00000490423 301 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 RN7SKP43-201ENST00000516173 320 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 RNU7-53P-201ENST00000516705 60 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 AC007318.2-201ENST00000620999 243 ntBASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
FOXD3Q9UJU5 SNORA51.5-201ENST00000384126 131 ntBASIC2.65□□□□□ -1.99
FOXD3Q9UJU5 Y_RNA.494-201ENST00000384432 111 ntBASIC2.65□□□□□ -1.99
FOXD3Q9UJU5 HMGN2P35-201ENST00000412164 270 ntBASIC2.65□□□□□ -1.99
FOXD3Q9UJU5 RN7SL633P-201ENST00000488974 297 ntBASIC2.65□□□□□ -1.99
FOXD3Q9UJU5 RNU6-537P-201ENST00000517277 103 ntBASIC2.65□□□□□ -1.99
FOXD3Q9UJU5 MIR5009-201ENST00000578736 100 ntBASIC2.65□□□□□ -1.99
FOXD3Q9UJU5 MIR3162-201ENST00000581818 82 ntBASIC2.65□□□□□ -1.99
FOXD3Q9UJU5 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.65□□□□□ -1.99
FOXD3Q9UJU5 MIR424-201ENST00000362227 98 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 U8.6-201ENST00000364939 135 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 SNORA24-201ENST00000384096 131 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 RNU6-1104P-201ENST00000384723 104 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 RNA5SP261-201ENST00000410536 106 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 AL139132.1-201ENST00000431587 344 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 AC105272.1-201ENST00000438604 198 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 SNORA31.25-201ENST00000517242 134 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 AC068339.1-201ENST00000526965 141 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 HSPE1P19-201ENST00000603327 295 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 SNORD3E-202ENST00000627253 216 ntBASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXD3Q9UJU5 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXD3Q9UJU5 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXD3Q9UJU5 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXD3Q9UJU5 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXD3Q9UJU5 VTRNA1-1-201ENST00000363120 99 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 253.1 ms