Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL627230.6-201ENST00000611129 280 ntBASIC1.94□□□□□ -2.1
VSX1Q9NZR4 uc_338.20-201ENST00000621563 178 ntBASIC1.94□□□□□ -2.1
VSX1Q9NZR4 AP000553.5-201ENST00000641933 54 ntBASIC1.94□□□□□ -2.1
VSX1Q9NZR4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
VSX1Q9NZR4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
VSX1Q9NZR4 MTND4LP9-201ENST00000427694 174 ntBASIC1.93□□□□□ -2.1
VSX1Q9NZR4 RNU7-34P-201ENST00000459394 64 ntBASIC1.93□□□□□ -2.1
VSX1Q9NZR4 RNU7-12P-201ENST00000516030 62 ntBASIC1.93□□□□□ -2.1
VSX1Q9NZR4 Y_RNA.692-201ENST00000516627 105 ntBASIC1.93□□□□□ -2.1
VSX1Q9NZR4 AL442644.1-201ENST00000454390 3105 ntBASIC1.93□□□□□ -2.1
VSX1Q9NZR4 MIR424-201ENST00000362227 98 ntBASIC1.92□□□□□ -2.1
VSX1Q9NZR4 RNU6-1123P-201ENST00000362347 106 ntBASIC1.92□□□□□ -2.1
VSX1Q9NZR4 SNORD115-28-201ENST00000363931 81 ntBASIC1.92□□□□□ -2.1
VSX1Q9NZR4 SNORA4.2-201ENST00000365313 147 ntBASIC1.92□□□□□ -2.1
VSX1Q9NZR4 RNA5SP37-201ENST00000365420 130 ntBASIC1.92□□□□□ -2.1
VSX1Q9NZR4 MIR518F-201ENST00000384973 87 ntBASIC1.92□□□□□ -2.1
VSX1Q9NZR4 U8.16-201ENST00000391279 133 ntBASIC1.92□□□□□ -2.1
VSX1Q9NZR4 AL603914.1-201ENST00000401964 204 ntBASIC1.92□□□□□ -2.1
VSX1Q9NZR4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.92□□□□□ -2.1
VSX1Q9NZR4 CALM2P4-201ENST00000430810 426 ntBASIC1.92□□□□□ -2.1
VSX1Q9NZR4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
VSX1Q9NZR4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
VSX1Q9NZR4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
VSX1Q9NZR4 RNU6-1189P-201ENST00000383958 107 ntBASIC1.91□□□□□ -2.1
VSX1Q9NZR4 MIR660-201ENST00000385235 97 ntBASIC1.91□□□□□ -2.1
VSX1Q9NZR4 AC008267.6-201ENST00000441664 139 ntBASIC1.91□□□□□ -2.1
VSX1Q9NZR4 RNU6-1270P-201ENST00000517128 108 ntBASIC1.91□□□□□ -2.1
VSX1Q9NZR4 MIR3129-201ENST00000581095 76 ntBASIC1.91□□□□□ -2.1
VSX1Q9NZR4 AC021506.2-201ENST00000612354 169 ntBASIC1.91□□□□□ -2.1
VSX1Q9NZR4 RNU6-915P-201ENST00000364943 103 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 SNORA1-201ENST00000384107 130 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 Y_RNA.547-201ENST00000384654 119 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 MIR548A2-201ENST00000384956 97 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 MIR676-201ENST00000390702 67 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 AL445646.1-201ENST00000431784 216 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 AC015922.2-201ENST00000435593 184 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 AF228730.3-201ENST00000436691 102 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 RNA5SP57-201ENST00000459463 123 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 RNU6-479P-201ENST00000516348 105 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 RNU6-113P-201ENST00000516653 101 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 RNA5SP364-201ENST00000516938 78 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 MIR4287-201ENST00000579398 78 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 AC011603.4-201ENST00000611325 277 ntBASIC1.9□□□□□ -2.11
VSX1Q9NZR4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
VSX1Q9NZR4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
VSX1Q9NZR4 SNORA1.2-201ENST00000365189 134 ntBASIC1.89□□□□□ -2.11
VSX1Q9NZR4 SNORD77.3-201ENST00000391113 65 ntBASIC1.89□□□□□ -2.11
VSX1Q9NZR4 AL627390.1-201ENST00000396055 340 ntBASIC1.89□□□□□ -2.11
VSX1Q9NZR4 RNU4-53P-201ENST00000410828 140 ntBASIC1.89□□□□□ -2.11
VSX1Q9NZR4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.89□□□□□ -2.11
VSX1Q9NZR4 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.89□□□□□ -2.11
VSX1Q9NZR4 AC025033.1-201ENST00000463883 194 ntBASIC1.89□□□□□ -2.11
VSX1Q9NZR4 RPL23AP94-201ENST00000512518 302 ntBASIC1.89□□□□□ -2.11
VSX1Q9NZR4 SNORA31.17-201ENST00000516953 127 ntBASIC1.89□□□□□ -2.11
VSX1Q9NZR4 MIR5197-201ENST00000583721 112 ntBASIC1.89□□□□□ -2.11
VSX1Q9NZR4 AL773524.1-201ENST00000614065 229 ntBASIC1.89□□□□□ -2.11
VSX1Q9NZR4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
VSX1Q9NZR4 Y_RNA.37-201ENST00000362606 108 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 RNU6-80P-201ENST00000384195 107 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 Y_RNA.500-201ENST00000384466 111 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 MIR136-201ENST00000385207 82 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 RNU6-460P-201ENST00000391158 108 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 AL023284.1-201ENST00000403956 276 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 AL021397.1-201ENST00000451806 248 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 RNU7-80P-201ENST00000459562 61 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 RN7SKP179-201ENST00000516126 217 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 RNU7-25P-201ENST00000516544 62 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 MIR4778-201ENST00000577635 80 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 SNORD3E-202ENST00000627253 216 ntBASIC1.88□□□□□ -2.11
VSX1Q9NZR4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.88□□□□□ -2.11
VSX1Q9NZR4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
VSX1Q9NZR4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
VSX1Q9NZR4 RNU6-661P-201ENST00000362409 107 ntBASIC1.87□□□□□ -2.11
VSX1Q9NZR4 RNA5SP276-201ENST00000362580 94 ntBASIC1.87□□□□□ -2.11
VSX1Q9NZR4 Y_RNA.52-201ENST00000362760 96 ntBASIC1.87□□□□□ -2.11
VSX1Q9NZR4 Y_RNA.454-201ENST00000384224 113 ntBASIC1.87□□□□□ -2.11
VSX1Q9NZR4 RNU6-22P-201ENST00000384355 107 ntBASIC1.87□□□□□ -2.11
VSX1Q9NZR4 AC244636.1-201ENST00000421152 228 ntBASIC1.87□□□□□ -2.11
VSX1Q9NZR4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.87□□□□□ -2.11
VSX1Q9NZR4 AC107297.1-201ENST00000459991 176 ntBASIC1.87□□□□□ -2.11
VSX1Q9NZR4 AC099513.1-201ENST00000490423 301 ntBASIC1.87□□□□□ -2.11
VSX1Q9NZR4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.87□□□□□ -2.11
VSX1Q9NZR4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.87□□□□□ -2.11
VSX1Q9NZR4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
VSX1Q9NZR4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
VSX1Q9NZR4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.86□□□□□ -2.11
VSX1Q9NZR4 RNU6-414P-201ENST00000363705 104 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 Y_RNA.291-201ENST00000364886 113 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 SNORA67.3-201ENST00000384366 140 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 RNU6-1067P-201ENST00000384752 107 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 SNORA40.5-201ENST00000391061 128 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 Z98742.3-201ENST00000418637 326 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 RNU6-717P-201ENST00000459076 104 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 RNU4-57P-201ENST00000515980 135 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 Y_RNA.690-201ENST00000516603 95 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 RNU1-40P-201ENST00000516816 164 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 RNU1-97P-201ENST00000516872 164 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 RNU6-1116P-201ENST00000517269 99 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 MIR3121-201ENST00000579680 77 ntBASIC1.86□□□□□ -2.11
VSX1Q9NZR4 AC012493.3-201ENST00000604494 112 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 178.4 ms