Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC012676.2-201ENST00000619258 186 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 AL353746.1-201ENST00000566293 6881 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 SNORA63.2-201ENST00000362603 126 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 RNU6-865P-201ENST00000364772 107 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 Y_RNA.448-201ENST00000384185 108 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 MIR1267-201ENST00000408723 78 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 TRBV12-1-201ENST00000479785 344 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 RNU6-557P-201ENST00000516842 110 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 RNU6-958P-201ENST00000516995 106 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 MTND5P40-201ENST00000559945 246 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 MIR3690-201ENST00000580266 75 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 AC006023.1-201ENST00000603944 259 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 MIR6841-201ENST00000637129 72 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 MIR622-201ENST00000638396 96 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 AC245060.5-201ENST00000610778 3293 ntBASIC3.28□□□□□ -1.88
NPAS3Q8IXF0 AP000648.3-201ENST00000623539 4507 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 MIR635-201ENST00000384830 98 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 RN7SKP220-201ENST00000410611 288 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 RNU2-37P-201ENST00000410695 177 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 AC123900.1-201ENST00000420390 96 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 MIR2276-201ENST00000516886 89 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 AC105081.1-201ENST00000617727 106 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 U6.98-201ENST00000637157 84 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 AL035425.3-201ENST00000564206 4996 ntBASIC3.27□□□□□ -1.89
NPAS3Q8IXF0 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 MIR340-201ENST00000362125 95 ntBASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 SNORA71.1-201ENST00000364523 117 ntBASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 RNU6-499P-201ENST00000365615 107 ntBASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 RNU2-58P-201ENST00000516403 183 ntBASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 IGLV3-17-201ENST00000519099 244 ntBASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 MIR4791-201ENST00000607666 84 ntBASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 MIR338-201ENST00000636369 67 ntBASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 AL021368.2-201ENST00000606125 5352 ntBASIC3.26□□□□□ -1.89
NPAS3Q8IXF0 Y_RNA.173-201ENST00000363776 113 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 RNU6-471P-201ENST00000383944 106 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 RNU6-480P-201ENST00000384332 107 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 Y_RNA.508-201ENST00000384502 114 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 RNU6-342P-201ENST00000384521 104 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 CST9LP2-201ENST00000437612 320 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 SNORD4B-201ENST00000459083 72 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 AC234781.5-201ENST00000508429 271 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 RPL12P50-201ENST00000603116 116 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 CTSLP2-204ENST00000629029 392 ntBASIC3.25□□□□□ -1.89
NPAS3Q8IXF0 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 AP003122.5-201ENST00000527668 3766 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 AC093908.1-201ENST00000623125 8092 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 RNA5SP189-201ENST00000364920 115 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 RNU6-163P-201ENST00000384396 106 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 SNORD15B-201ENST00000384714 146 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 SNORA26.6-201ENST00000391256 115 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 RNU6-587P-201ENST00000391282 106 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 RNU7-67P-201ENST00000459003 62 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 SEM1P1-201ENST00000506694 209 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 RNA5SP112-201ENST00000515937 99 ntBASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
NPAS3Q8IXF0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 RNU6-546P-201ENST00000383991 107 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 SNORA2B-201ENST00000384583 137 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 Y_RNA.596-201ENST00000410462 109 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 AL139132.1-201ENST00000431587 344 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 AC093423.1-201ENST00000440817 142 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 HMGN1P18-201ENST00000457642 277 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 SNORD67.1-201ENST00000516618 108 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 MIR4796-201ENST00000580742 81 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 MIR6076-201ENST00000617521 113 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 MIR6717-201ENST00000622747 73 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 MIR7153-201ENST00000637758 57 ntBASIC3.23□□□□□ -1.89
NPAS3Q8IXF0 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 RNU6-424P-201ENST00000384367 105 ntBASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 SNORD67-201ENST00000390833 111 ntBASIC3.22□□□□□ -1.89
NPAS3Q8IXF0 RNU6-663P-201ENST00000391105 106 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms