Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.35□□□□□ -2.03
USP39Q53GS9 RNU6-1146P-201ENST00000516282 102 ntBASIC2.35□□□□□ -2.03
USP39Q53GS9 IGLV3-17-201ENST00000519099 244 ntBASIC2.35□□□□□ -2.03
USP39Q53GS9 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.35□□□□□ -2.03
USP39Q53GS9 AL137847.3-201ENST00000611521 109 ntBASIC2.35□□□□□ -2.03
USP39Q53GS9 AL591926.4-201ENST00000616895 298 ntBASIC2.35□□□□□ -2.03
USP39Q53GS9 AL035470.1-201ENST00000622571 220 ntBASIC2.35□□□□□ -2.03
USP39Q53GS9 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
USP39Q53GS9 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.35□□□□□ -2.03
USP39Q53GS9 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.34□□□□□ -2.03
USP39Q53GS9 MIR522-201ENST00000385071 87 ntBASIC2.34□□□□□ -2.03
USP39Q53GS9 RPS15AP28-201ENST00000435088 386 ntBASIC2.34□□□□□ -2.03
USP39Q53GS9 AL353689.1-201ENST00000438895 199 ntBASIC2.34□□□□□ -2.03
USP39Q53GS9 SNRPGP13-201ENST00000442212 177 ntBASIC2.34□□□□□ -2.03
USP39Q53GS9 RNU6-1041P-201ENST00000516254 102 ntBASIC2.34□□□□□ -2.03
USP39Q53GS9 MIR5197-201ENST00000583721 112 ntBASIC2.34□□□□□ -2.03
USP39Q53GS9 AP001318.4-201ENST00000616637 121 ntBASIC2.34□□□□□ -2.03
USP39Q53GS9 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.34□□□□□ -2.03
USP39Q53GS9 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
USP39Q53GS9 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP39Q53GS9 MIR21-201ENST00000362134 72 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 Y_RNA.163-201ENST00000363702 113 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 Y_RNA.267-201ENST00000364679 109 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 AL117342.1-201ENST00000404861 406 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 FTH1P12-201ENST00000432137 551 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 HMGN2P32-201ENST00000444648 269 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 RPL23AP42-201ENST00000471152 471 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 RPS26P48-201ENST00000491713 339 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 RNU6-240P-201ENST00000516098 97 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 AL358944.1-201ENST00000528537 144 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 AL353149.1-201ENST00000610667 244 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 AL359075.3-201ENST00000613288 217 ntBASIC2.33□□□□□ -2.04
USP39Q53GS9 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
USP39Q53GS9 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.32□□□□□ -2.04
USP39Q53GS9 MIR126-201ENST00000362291 85 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 SNORD114-6-201ENST00000364393 72 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 U8.6-201ENST00000364939 135 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 RNU6-756P-201ENST00000383997 107 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 SNORA51.10-201ENST00000384418 136 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 MIR1302-4-201ENST00000408701 150 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 CYP2C59P-201ENST00000457790 269 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 RNU6-548P-201ENST00000517083 115 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 RNA5SP402-201ENST00000517148 110 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 MIR5694-201ENST00000581190 76 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 MIR5007-201ENST00000583098 95 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.32□□□□□ -2.04
USP39Q53GS9 AC087685.1-201ENST00000587507 141 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 RNU6-94P-201ENST00000607728 107 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 MIR6840-201ENST00000611937 71 ntBASIC2.32□□□□□ -2.04
USP39Q53GS9 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.32□□□□□ -2.04
USP39Q53GS9 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
USP39Q53GS9 SNORA1B-201ENST00000362535 133 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 Y_RNA.323-201ENST00000365157 109 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 RNU6-1014P-201ENST00000383940 103 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 RNU1-148P-201ENST00000384472 162 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 MT-TI-201ENST00000387365 69 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 RNA5SP270-201ENST00000411361 118 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 EDDM3CP-201ENST00000415977 425 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 SNRPGP14-201ENST00000435400 219 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 RNU7-193P-201ENST00000516723 65 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 RNU6-844P-201ENST00000517175 102 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 AC067747.1-201ENST00000608026 250 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 AL353997.5-201ENST00000618886 171 ntBASIC2.31□□□□□ -2.04
USP39Q53GS9 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
USP39Q53GS9 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
USP39Q53GS9 RNU6-349P-201ENST00000362402 107 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 Y_RNA.198-201ENST00000364013 98 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 SNORD73B-201ENST00000364394 72 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 SNORA51.5-201ENST00000384126 131 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 RNU11-5P-201ENST00000391216 129 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 RNU2-63P-201ENST00000410792 194 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 RPL39P34-201ENST00000477141 156 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.3□□□□□ -2.04
USP39Q53GS9 RNU6-667P-201ENST00000517186 102 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 AC024614.2-201ENST00000577584 372 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 AC006441.5-201ENST00000612680 209 ntBASIC2.3□□□□□ -2.04
USP39Q53GS9 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.3□□□□□ -2.04
USP39Q53GS9 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
USP39Q53GS9 AL596028.1-201ENST00000326971 197 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 SNORA63.5-201ENST00000363548 123 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 RNA5SP99-201ENST00000364020 114 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 RNU1-51P-201ENST00000365345 176 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 RNU6-49P-201ENST00000384256 107 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 MIR548O-201ENST00000408583 114 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 CKS1BP2-201ENST00000497342 240 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 RNU7-25P-201ENST00000516544 62 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 RNY4P20-201ENST00000516678 93 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 MIR4762-201ENST00000585261 75 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 AC078899.2-201ENST00000595282 212 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 MIR219B-201ENST00000637023 88 ntBASIC2.29□□□□□ -2.04
USP39Q53GS9 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
USP39Q53GS9 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
USP39Q53GS9 Y_RNA.362-201ENST00000365518 110 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 Y_RNA.410-201ENST00000383992 113 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 MIR561-201ENST00000385216 97 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 MIR1302-5-201ENST00000408164 150 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 SNORA11.4-201ENST00000408823 129 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 AL049830.1-201ENST00000468034 425 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 RNU6-830P-201ENST00000516353 107 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 216.8 ms