Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 Y_RNA.10-201ENST00000362371 110 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 RNU6-49P-201ENST00000384256 107 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 RNU1-148P-201ENST00000384472 162 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 Y_RNA.531-201ENST00000384589 121 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 SNORA26.2-201ENST00000390922 122 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 U8.16-201ENST00000391279 133 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 RNA5SP261-201ENST00000410536 106 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 HSPE1P9-201ENST00000440046 311 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 RNU2-11P-201ENST00000459191 187 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 RNU7-12P-201ENST00000516030 62 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 RNA5SP168-201ENST00000516642 112 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 AC004812.1-201ENST00000540773 146 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 Y_RNA.107-201ENST00000363190 121 ntBASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 SNORA19.1-201ENST00000410656 129 ntBASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 RNU7-26P-201ENST00000458980 63 ntBASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 RPPH1-2P-201ENST00000516688 293 ntBASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 MIR5047-201ENST00000579212 100 ntBASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 AC022202.1-201ENST00000613515 211 ntBASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 SNORA50A-202ENST00000629536 136 ntBASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LIMD1Q9UGP4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 SNORD115-19-201ENST00000363098 82 ntBASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 SNORD115-18-201ENST00000363293 82 ntBASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 SNORD115-17-201ENST00000364612 82 ntBASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 RNU6-1031P-201ENST00000384773 107 ntBASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 RNU7-53P-201ENST00000516705 60 ntBASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 AC104984.5-201ENST00000586878 94 ntBASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
LIMD1Q9UGP4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
LIMD1Q9UGP4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.88
LIMD1Q9UGP4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 AL035425.3-201ENST00000564206 4996 ntBASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 AC007336.1-201ENST00000576365 3828 ntBASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 MIR520A-201ENST00000384862 85 ntBASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 MIR136-201ENST00000385207 82 ntBASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 AC022018.1-201ENST00000430685 241 ntBASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 RNU7-181P-201ENST00000517234 74 ntBASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 GTF3AP2-201ENST00000557014 266 ntBASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 AL442128.1-201ENST00000615151 90 ntBASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.33□□□□□ -1.88
LIMD1Q9UGP4 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 RNU1-70P-201ENST00000362618 164 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 Y_RNA.370-201ENST00000365589 108 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 RNU6-1319P-201ENST00000390855 104 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 RNU6-747P-201ENST00000390928 104 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 RNU6-241P-201ENST00000391148 104 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 RNU2-7P-201ENST00000410794 178 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 RNU6-177P-201ENST00000411257 104 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 RN7SL442P-201ENST00000473804 320 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 RNA5SP356-201ENST00000515972 94 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 SCARNA23-201ENST00000516060 130 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 MIR2682-201ENST00000580305 110 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 MIR3945-201ENST00000581853 98 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 MIR6715A-201ENST00000615929 79 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 AC087741.2-201ENST00000619415 172 ntBASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
LIMD1Q9UGP4 AC092881.1-201ENST00000638218 2733 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 SNORA71.1-201ENST00000364523 117 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 SNORA4.2-201ENST00000365313 147 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 MIR488-201ENST00000365739 83 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 RNU1-109P-201ENST00000383960 147 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 SNORA7.4-201ENST00000384249 137 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 MIR597-201ENST00000384968 97 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 Y_RNA.601-201ENST00000410500 113 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 RNY4P29-201ENST00000410801 97 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 AL135938.1-201ENST00000443141 297 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 MIR2276-201ENST00000516886 89 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 uc_338.1-201ENST00000612113 180 ntBASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIMD1Q9UGP4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 RNY3P2-201ENST00000362918 102 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 Y_RNA.494-201ENST00000384432 111 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 EEF1A1P41-201ENST00000414667 207 ntBASIC3.3□□□□□ -1.88
LIMD1Q9UGP4 POLR2J4-204ENST00000418424 324 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms