Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH5O43196 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSH5O43196 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH5O43196 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
MSH5O43196 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH5O43196 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH5O43196 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC5.67□□□□□ -1.5
MSH5O43196 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC5.67□□□□□ -1.5
MSH5O43196 RNU6-986P-201ENST00000363133 102 ntBASIC5.67□□□□□ -1.5
MSH5O43196 snoU13.2-201ENST00000459201 104 ntBASIC5.67□□□□□ -1.5
MSH5O43196 AC026726.1-201ENST00000512859 601 ntBASIC5.67□□□□□ -1.5
MSH5O43196 RNA5SP497-201ENST00000516081 97 ntBASIC5.67□□□□□ -1.5
MSH5O43196 SCARNA17.1-201ENST00000516211 143 ntBASIC5.67□□□□□ -1.5
MSH5O43196 SCARNA17.2-201ENST00000516334 143 ntBASIC5.67□□□□□ -1.5
MSH5O43196 AC005786.1-201ENST00000588553 154 ntBASIC5.67□□□□□ -1.5
MSH5O43196 SCARNA17.4-201ENST00000614296 143 ntBASIC5.67□□□□□ -1.5
MSH5O43196 AC139713.2-215ENST00000641428 5037 ntBASIC5.67□□□□□ -1.5
MSH5O43196 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH5O43196 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH5O43196 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH5O43196 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH5O43196 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSH5O43196 RNU1-15P-201ENST00000353977 144 ntBASIC5.66□□□□□ -1.5
MSH5O43196 RNA5SP130-201ENST00000364431 114 ntBASIC5.66□□□□□ -1.5
MSH5O43196 Y_RNA.536-201ENST00000384621 113 ntBASIC5.66□□□□□ -1.5
MSH5O43196 MIR592-201ENST00000384959 97 ntBASIC5.66□□□□□ -1.5
MSH5O43196 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.66□□□□□ -1.5
MSH5O43196 AL138721.1-201ENST00000616756 179 ntBASIC5.66□□□□□ -1.5
MSH5O43196 U6.103-201ENST00000637085 61 ntBASIC5.66□□□□□ -1.5
MSH5O43196 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH5O43196 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.66□□□□□ -1.5
MSH5O43196 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.65□□□□□ -1.5
MSH5O43196 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSH5O43196 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
MSH5O43196 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
MSH5O43196 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSH5O43196 RNU6-1260P-201ENST00000362944 107 ntBASIC5.65□□□□□ -1.5
MSH5O43196 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSH5O43196 FO393413.1-201ENST00000402892 195 ntBASIC5.65□□□□□ -1.5
MSH5O43196 SNORD75.2-201ENST00000408784 58 ntBASIC5.65□□□□□ -1.5
MSH5O43196 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC5.65□□□□□ -1.5
MSH5O43196 SNORA31.21-201ENST00000517180 77 ntBASIC5.65□□□□□ -1.5
MSH5O43196 MIR5739-201ENST00000619803 80 ntBASIC5.65□□□□□ -1.5
MSH5O43196 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSH5O43196 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSH5O43196 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
MSH5O43196 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSH5O43196 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
MSH5O43196 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSH5O43196 SNORA63.1-201ENST00000362493 131 ntBASIC5.64□□□□□ -1.51
MSH5O43196 MIR218-1-201ENST00000384999 110 ntBASIC5.64□□□□□ -1.51
MSH5O43196 U8.13-201ENST00000390842 128 ntBASIC5.64□□□□□ -1.51
MSH5O43196 AL023284.1-201ENST00000403956 276 ntBASIC5.64□□□□□ -1.51
MSH5O43196 AC020914.4-201ENST00000597690 277 ntBASIC5.64□□□□□ -1.51
MSH5O43196 AC002076.2-201ENST00000617362 122 ntBASIC5.64□□□□□ -1.51
MSH5O43196 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
MSH5O43196 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.64□□□□□ -1.51
MSH5O43196 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSH5O43196 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
MSH5O43196 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.63□□□□□ -1.51
MSH5O43196 SCN1A-220ENST00000641603 12506 ntBASIC5.63□□□□□ -1.51
MSH5O43196 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSH5O43196 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSH5O43196 RNU4-58P-201ENST00000363192 141 ntBASIC5.63□□□□□ -1.51
MSH5O43196 MIR588-201ENST00000384900 83 ntBASIC5.63□□□□□ -1.51
MSH5O43196 RNU6-696P-201ENST00000390834 107 ntBASIC5.63□□□□□ -1.51
MSH5O43196 AL139132.1-201ENST00000431587 344 ntBASIC5.63□□□□□ -1.51
MSH5O43196 RNA5SP49-201ENST00000516450 115 ntBASIC5.63□□□□□ -1.51
MSH5O43196 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSH5O43196 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSH5O43196 SNORD100-201ENST00000408573 76 ntBASIC5.62□□□□□ -1.51
MSH5O43196 MIR2114-201ENST00000516645 80 ntBASIC5.62□□□□□ -1.51
MSH5O43196 SNORA25.16-201ENST00000516741 121 ntBASIC5.62□□□□□ -1.51
MSH5O43196 RNU6-656P-201ENST00000516785 107 ntBASIC5.62□□□□□ -1.51
MSH5O43196 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC5.62□□□□□ -1.51
MSH5O43196 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSH5O43196 AF117829.1-206ENST00000621883 3802 ntBASIC5.61□□□□□ -1.51
MSH5O43196 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
MSH5O43196 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSH5O43196 Y_RNA.99-201ENST00000363138 105 ntBASIC5.61□□□□□ -1.51
MSH5O43196 SNORA9.3-201ENST00000516383 129 ntBASIC5.61□□□□□ -1.51
MSH5O43196 Vault.1-201ENST00000516474 102 ntBASIC5.61□□□□□ -1.51
MSH5O43196 RNU7-43P-201ENST00000516554 64 ntBASIC5.61□□□□□ -1.51
MSH5O43196 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSH5O43196 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
MSH5O43196 AP006437.1-201ENST00000641440 3685 ntBASIC5.61□□□□□ -1.51
MSH5O43196 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
MSH5O43196 GABRG2-229ENST00000641017 3628 ntBASIC5.6□□□□□ -1.51
MSH5O43196 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH5O43196 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH5O43196 RNA5SP189-201ENST00000364920 115 ntBASIC5.6□□□□□ -1.51
MSH5O43196 RNU1-44P-201ENST00000384453 163 ntBASIC5.6□□□□□ -1.51
MSH5O43196 MIR519A1-201ENST00000385257 85 ntBASIC5.6□□□□□ -1.51
MSH5O43196 PRSS3P4-201ENST00000453323 162 ntBASIC5.6□□□□□ -1.51
MSH5O43196 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH5O43196 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH5O43196 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
MSH5O43196 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSH5O43196 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSH5O43196 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 149 ms