Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RN7SKP200-201ENST00000410564 320 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 AC092427.1-202ENST00000430569 476 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 AL606517.2-201ENST00000442855 241 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 RNU7-80P-201ENST00000459562 61 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 RN7SL293P-201ENST00000481765 281 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 MIR4762-201ENST00000585261 75 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 CTSLP2-204ENST00000629029 392 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 MIR1255B1-201ENST00000636325 63 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 RNA5SP493-201ENST00000364115 91 ntBASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.466-201ENST00000384294 113 ntBASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 AC022254.1-201ENST00000567857 235 ntBASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 MIR4778-201ENST00000577635 80 ntBASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 MIR3683-201ENST00000580847 82 ntBASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HIF3AQ9Y2N7 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-228P-201ENST00000362700 106 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.155-201ENST00000363632 101 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-1124P-201ENST00000384169 107 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.507-201ENST00000384500 99 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 SNORA46-201ENST00000384762 135 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-644P-201ENST00000391155 98 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-972P-201ENST00000391208 107 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 AC099677.2-201ENST00000436385 175 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 AC022137.1-201ENST00000483735 151 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 RNU2-13P-201ENST00000515909 113 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-1116P-201ENST00000517269 99 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 AC078899.2-201ENST00000595282 212 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.773-201ENST00000607168 90 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 AC012531.4-201ENST00000616509 177 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 AC087741.2-201ENST00000619415 172 ntBASIC2.84□□□□□ -1.95
HIF3AQ9Y2N7 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
HIF3AQ9Y2N7 MAPK10-266ENST00000641066 6555 ntBASIC2.84□□□□□ -1.96
HIF3AQ9Y2N7 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.96
HIF3AQ9Y2N7 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 RNU6-1099P-201ENST00000363533 107 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 SNORD56.5-201ENST00000364281 72 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 Y_RNA.454-201ENST00000384224 113 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 AL512326.2-201ENST00000426359 151 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 AC245047.3-201ENST00000429428 127 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 UQCRHP3-201ENST00000451503 251 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 AL049873.1-201ENST00000480540 376 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 RN7SL297P-201ENST00000483161 293 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 MIR3169-201ENST00000578032 83 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 MIR3618-201ENST00000580330 88 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 MIR548Z-201ENST00000584743 97 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 U7.3-201ENST00000616123 62 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 AC095038.3-201ENST00000634439 195 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 MIR203B-201ENST00000636080 86 ntBASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.83□□□□□ -1.96
HIF3AQ9Y2N7 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 AC073346.2-201ENST00000624724 2058 ntBASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 Y_RNA.73-201ENST00000362910 113 ntBASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 RNU6-23P-201ENST00000363283 107 ntBASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 Y_RNA.241-201ENST00000364470 117 ntBASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 Y_RNA.336-201ENST00000365307 109 ntBASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 Y_RNA.601-201ENST00000410500 113 ntBASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 AC087499.4-201ENST00000448505 178 ntBASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 AC026271.5-201ENST00000577873 130 ntBASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 FAM71BP1-201ENST00000604431 523 ntBASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.82□□□□□ -1.96
HIF3AQ9Y2N7 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 AC096644.4-201ENST00000563417 2912 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 SNORA25.6-201ENST00000364121 118 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 RNY1P1-201ENST00000364372 112 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 RNU6-497P-201ENST00000365316 104 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 MIR577-201ENST00000385196 96 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 RNA5SP109-201ENST00000391010 116 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 RNA5SP482-201ENST00000391269 118 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 RNA5SP144-201ENST00000410846 116 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 AC104389.3-201ENST00000445629 235 ntBASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.81□□□□□ -1.96
HIF3AQ9Y2N7 AC114811.1-201ENST00000507207 168 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 459.2 ms