Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
ZC3H4Q9UPT8 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
ZC3H4Q9UPT8 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ZC3H4Q9UPT8 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
ZC3H4Q9UPT8 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.61□□□□□ -1.83
ZC3H4Q9UPT8 AC104389.3-201ENST00000445629 235 ntBASIC3.61□□□□□ -1.83
ZC3H4Q9UPT8 snoU13.23-201ENST00000458863 104 ntBASIC3.61□□□□□ -1.83
ZC3H4Q9UPT8 RPS26P48-201ENST00000491713 339 ntBASIC3.61□□□□□ -1.83
ZC3H4Q9UPT8 SNORD115-28-201ENST00000363931 81 ntBASIC3.6□□□□□ -1.83
ZC3H4Q9UPT8 SNORA9.2-201ENST00000365361 133 ntBASIC3.6□□□□□ -1.83
ZC3H4Q9UPT8 SUMO2P16-201ENST00000519475 264 ntBASIC3.6□□□□□ -1.83
ZC3H4Q9UPT8 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.6□□□□□ -1.83
ZC3H4Q9UPT8 AL353149.1-201ENST00000610667 244 ntBASIC3.6□□□□□ -1.83
ZC3H4Q9UPT8 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 RNA5SP383-201ENST00000362934 120 ntBASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 RNU1-133P-201ENST00000364867 167 ntBASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 snoU2-30.1-201ENST00000365012 70 ntBASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 Y_RNA.323-201ENST00000365157 109 ntBASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 Y_RNA.544-201ENST00000384650 113 ntBASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 RN7SKP43-201ENST00000516173 320 ntBASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 SNORA18.7-201ENST00000516910 131 ntBASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 AC015726.2-201ENST00000620112 122 ntBASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 AC073476.4-201ENST00000628409 72 ntBASIC3.59□□□□□ -1.83
ZC3H4Q9UPT8 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.84
ZC3H4Q9UPT8 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 ZNF720P1-201ENST00000562403 1939 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 Y_RNA.37-201ENST00000362606 108 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 SNORD114-6-201ENST00000364393 72 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 RNY1P6-201ENST00000384193 109 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-160P-201ENST00000384591 107 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-440P-201ENST00000390882 105 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-220P-201ENST00000390919 107 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 AL445646.1-201ENST00000431784 216 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 AL163195.1-201ENST00000496941 348 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 Y_RNA.676-201ENST00000516393 96 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 SNORD36C-201ENST00000516733 66 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 AC141557.1-201ENST00000540982 400 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 AL596211.1-201ENST00000569873 2277 ntBASIC3.58□□□□□ -1.84
ZC3H4Q9UPT8 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 AC093831.2-201ENST00000624393 3427 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-49P-201ENST00000384256 107 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-1072P-201ENST00000384703 107 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-443P-201ENST00000384780 107 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 MIR515-2-201ENST00000384883 83 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 MIR515-1-201ENST00000384884 83 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 SNORA26.2-201ENST00000390922 122 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 SRIP3-201ENST00000413200 219 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 RNU7-164P-201ENST00000459221 62 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 AC018868.1-201ENST00000491307 315 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 AC008413.1-201ENST00000511864 177 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-830P-201ENST00000516353 107 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 AC245166.1-201ENST00000521012 253 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 SNORD53-201ENST00000579969 78 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 AC006441.5-201ENST00000612680 209 ntBASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
ZC3H4Q9UPT8 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 Y_RNA.99-201ENST00000363138 105 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 SNORA25B-201ENST00000365507 128 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 Y_RNA.547-201ENST00000384654 119 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 Y_RNA.558-201ENST00000384685 113 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 RPL21P3-201ENST00000395517 478 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 RN7SL636P-201ENST00000497504 294 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-109P-201ENST00000516364 107 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-184P-201ENST00000516514 107 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-94P-201ENST00000607728 107 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 CTSLP2-204ENST00000629029 392 ntBASIC3.56□□□□□ -1.84
ZC3H4Q9UPT8 PWAR6-201ENST00000552334 4618 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 ZNF658B-202ENST00000615961 3375 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 MIR342-201ENST00000362212 99 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-349P-201ENST00000362402 107 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-862P-201ENST00000362804 105 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 U8.2-201ENST00000363156 134 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-268P-201ENST00000364174 107 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 Y_RNA.265-201ENST00000364677 108 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 Y_RNA.298-201ENST00000364960 107 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 MIR590-201ENST00000385008 97 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 SNORA19.1-201ENST00000410656 129 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 SNORD45.4-201ENST00000516629 73 ntBASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
ZC3H4Q9UPT8 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ZC3H4Q9UPT8 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ZC3H4Q9UPT8 SNX2P2-201ENST00000424553 323 ntBASIC3.54□□□□□ -1.84
ZC3H4Q9UPT8 AL603825.1-201ENST00000438481 80 ntBASIC3.54□□□□□ -1.84
ZC3H4Q9UPT8 RNU6-844P-201ENST00000517175 102 ntBASIC3.54□□□□□ -1.84
ZC3H4Q9UPT8 AC024995.1-201ENST00000523014 93 ntBASIC3.54□□□□□ -1.84
ZC3H4Q9UPT8 AC068339.1-201ENST00000526965 141 ntBASIC3.54□□□□□ -1.84
ZC3H4Q9UPT8 AC007536.1-201ENST00000533382 349 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms