Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 AC009474.2-201ENST00000451383 136 ntBASIC6.25□□□□□ -1.41
SENP3Q9H4L4 RPL23AP42-201ENST00000471152 471 ntBASIC6.25□□□□□ -1.41
SENP3Q9H4L4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC6.25□□□□□ -1.41
SENP3Q9H4L4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SENP3Q9H4L4 U3.27-201ENST00000391237 200 ntBASIC6.24□□□□□ -1.41
SENP3Q9H4L4 RNU6-994P-201ENST00000410507 111 ntBASIC6.24□□□□□ -1.41
SENP3Q9H4L4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC6.24□□□□□ -1.41
SENP3Q9H4L4 AC104619.4-201ENST00000510773 249 ntBASIC6.24□□□□□ -1.41
SENP3Q9H4L4 RNU6-1089P-201ENST00000516473 104 ntBASIC6.24□□□□□ -1.41
SENP3Q9H4L4 AL606490.9-201ENST00000603331 271 ntBASIC6.24□□□□□ -1.41
SENP3Q9H4L4 SNORA51-201ENST00000606420 132 ntBASIC6.24□□□□□ -1.41
SENP3Q9H4L4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC6.24□□□□□ -1.41
SENP3Q9H4L4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3Q9H4L4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3Q9H4L4 RNU6-1165P-201ENST00000410119 107 ntBASIC6.23□□□□□ -1.41
SENP3Q9H4L4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC6.23□□□□□ -1.41
SENP3Q9H4L4 AC110079.1-202ENST00000635213 138 ntBASIC6.23□□□□□ -1.41
SENP3Q9H4L4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3Q9H4L4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
SENP3Q9H4L4 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3Q9H4L4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3Q9H4L4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3Q9H4L4 RNA5SP51-201ENST00000364750 119 ntBASIC6.22□□□□□ -1.41
SENP3Q9H4L4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3Q9H4L4 AC009093.8-201ENST00000641769 292 ntBASIC6.22□□□□□ -1.41
SENP3Q9H4L4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC6.21□□□□□ -1.42
SENP3Q9H4L4 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SENP3Q9H4L4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
SENP3Q9H4L4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
SENP3Q9H4L4 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC6.21□□□□□ -1.42
SENP3Q9H4L4 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC6.2□□□□□ -1.42
SENP3Q9H4L4 RNU1-91P-201ENST00000364746 163 ntBASIC6.2□□□□□ -1.42
SENP3Q9H4L4 RNU6-1250P-201ENST00000391218 107 ntBASIC6.2□□□□□ -1.42
SENP3Q9H4L4 RNA5SP249-201ENST00000516127 99 ntBASIC6.2□□□□□ -1.42
SENP3Q9H4L4 AC015912.2-201ENST00000571053 181 ntBASIC6.2□□□□□ -1.42
SENP3Q9H4L4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SENP3Q9H4L4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SENP3Q9H4L4 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
SENP3Q9H4L4 RNU7-41P-201ENST00000515917 61 ntBASIC6.19□□□□□ -1.42
SENP3Q9H4L4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
SENP3Q9H4L4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SENP3Q9H4L4 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SENP3Q9H4L4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3Q9H4L4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3Q9H4L4 AL365361.1-201ENST00000566942 3481 ntBASIC6.18□□□□□ -1.42
SENP3Q9H4L4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
SENP3Q9H4L4 RNU1-14P-201ENST00000362759 152 ntBASIC6.18□□□□□ -1.42
SENP3Q9H4L4 RNA5SP22-201ENST00000365393 109 ntBASIC6.18□□□□□ -1.42
SENP3Q9H4L4 S100A11P1-201ENST00000477525 312 ntBASIC6.18□□□□□ -1.42
SENP3Q9H4L4 RN7SKP83-201ENST00000516512 178 ntBASIC6.18□□□□□ -1.42
SENP3Q9H4L4 CYCSP30-201ENST00000546447 172 ntBASIC6.18□□□□□ -1.42
SENP3Q9H4L4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3Q9H4L4 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3Q9H4L4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC6.18□□□□□ -1.42
SENP3Q9H4L4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3Q9H4L4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
SENP3Q9H4L4 AC092435.3-201ENST00000565538 3654 ntBASIC6.18□□□□□ -1.42
SENP3Q9H4L4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SENP3Q9H4L4 AC107068.1-201ENST00000563286 4218 ntBASIC6.17□□□□□ -1.42
SENP3Q9H4L4 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SENP3Q9H4L4 SNORA25.3-201ENST00000363205 127 ntBASIC6.17□□□□□ -1.42
SENP3Q9H4L4 MIR34B-201ENST00000385076 84 ntBASIC6.17□□□□□ -1.42
SENP3Q9H4L4 RNA5SP497-201ENST00000516081 97 ntBASIC6.17□□□□□ -1.42
SENP3Q9H4L4 PRELID3BP2-201ENST00000605362 201 ntBASIC6.17□□□□□ -1.42
SENP3Q9H4L4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SENP3Q9H4L4 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
SENP3Q9H4L4 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3Q9H4L4 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3Q9H4L4 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3Q9H4L4 MIR630-201ENST00000384957 97 ntBASIC6.16□□□□□ -1.42
SENP3Q9H4L4 MIR514B-201ENST00000516774 80 ntBASIC6.16□□□□□ -1.42
SENP3Q9H4L4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3Q9H4L4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SENP3Q9H4L4 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SENP3Q9H4L4 SPATA31D2P-201ENST00000429999 4388 ntBASIC6.15□□□□□ -1.42
SENP3Q9H4L4 RNU1-70P-201ENST00000362618 164 ntBASIC6.15□□□□□ -1.42
SENP3Q9H4L4 Y_RNA.588-201ENST00000391254 102 ntBASIC6.15□□□□□ -1.42
SENP3Q9H4L4 CKS1BP6-201ENST00000424932 240 ntBASIC6.15□□□□□ -1.42
SENP3Q9H4L4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
SENP3Q9H4L4 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
SENP3Q9H4L4 RNU1-63P-201ENST00000383902 164 ntBASIC6.14□□□□□ -1.43
SENP3Q9H4L4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC6.14□□□□□ -1.43
SENP3Q9H4L4 RNU7-24P-201ENST00000458867 62 ntBASIC6.14□□□□□ -1.43
SENP3Q9H4L4 NDUFB9P3-201ENST00000521269 501 ntBASIC6.14□□□□□ -1.43
SENP3Q9H4L4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3Q9H4L4 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3Q9H4L4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC6.14□□□□□ -1.43
SENP3Q9H4L4 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SENP3Q9H4L4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
SENP3Q9H4L4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
SENP3Q9H4L4 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC6.13□□□□□ -1.43
SENP3Q9H4L4 RNA5SP175-201ENST00000364275 119 ntBASIC6.13□□□□□ -1.43
SENP3Q9H4L4 MT-TF-201ENST00000387314 71 ntBASIC6.13□□□□□ -1.43
SENP3Q9H4L4 RNU7-119P-201ENST00000459279 63 ntBASIC6.13□□□□□ -1.43
SENP3Q9H4L4 MIR6500-201ENST00000622700 86 ntBASIC6.13□□□□□ -1.43
SENP3Q9H4L4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
SENP3Q9H4L4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SENP3Q9H4L4 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
SENP3Q9H4L4 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.13□□□□□ -1.43
SENP3Q9H4L4 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms