Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SCARNA3-201ENST00000517097 143 ntBASIC3.84□□□□□ -1.79
NKX2-3Q8TAU0 RNU6-586P-201ENST00000517265 104 ntBASIC3.84□□□□□ -1.79
NKX2-3Q8TAU0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX2-3Q8TAU0 MIR3162-201ENST00000581818 82 ntBASIC3.84□□□□□ -1.79
NKX2-3Q8TAU0 AC103810.7-201ENST00000607821 91 ntBASIC3.84□□□□□ -1.79
NKX2-3Q8TAU0 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
NKX2-3Q8TAU0 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
NKX2-3Q8TAU0 MAPK10-322ENST00000641485 4530 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-1084P-201ENST00000362498 107 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 SNORA1B-201ENST00000362535 133 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 snoU2-30.2-201ENST00000362805 70 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 SNORA27-201ENST00000384323 126 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 AL161932.1-201ENST00000437408 146 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 AC093729.1-201ENST00000513074 128 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-998P-201ENST00000515894 101 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 SNORA31.4-201ENST00000516049 129 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 RNU1-143P-201ENST00000516296 146 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 MIR4425-201ENST00000580572 84 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 MIR4765-201ENST00000585007 77 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 U1.23-201ENST00000610293 146 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 uc_338.1-201ENST00000612113 180 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 RNU1-68P-201ENST00000615382 146 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 U1.39-201ENST00000621562 146 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 MIR1248-201ENST00000629190 106 ntBASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
NKX2-3Q8TAU0 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-315P-201ENST00000362666 107 ntBASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-457P-201ENST00000363999 107 ntBASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-1083P-201ENST00000384022 107 ntBASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-524P-201ENST00000384270 107 ntBASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 AC090844.1-201ENST00000422019 156 ntBASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 SNX2P2-201ENST00000424553 323 ntBASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 RNU7-113P-201ENST00000459273 62 ntBASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
NKX2-3Q8TAU0 MIR342-201ENST00000362212 99 ntBASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 RNA5SP139-201ENST00000364340 117 ntBASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 Y_RNA.332-201ENST00000365271 113 ntBASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 RNU7-94P-201ENST00000459576 63 ntBASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 SNORD45.4-201ENST00000516629 73 ntBASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 RNVU1-4-201ENST00000612985 164 ntBASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
NKX2-3Q8TAU0 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 AC091564.4-201ENST00000533934 2194 ntBASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 SNORD68-201ENST00000363214 84 ntBASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 AC244505.4-201ENST00000434905 287 ntBASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 SSXP5-201ENST00000443473 287 ntBASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 U6.108-201ENST00000637764 58 ntBASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 AC008264.2-201ENST00000610193 3731 ntBASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NKX2-3Q8TAU0 AC092881.1-201ENST00000638218 2733 ntBASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 SNORA54-201ENST00000384281 123 ntBASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 AL109933.2-201ENST00000452651 260 ntBASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-539P-201ENST00000516665 103 ntBASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 AC140658.3-201ENST00000567603 271 ntBASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 UBL5P2-201ENST00000583788 219 ntBASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 ZNF861P-201ENST00000588126 639 ntBASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-86P-201ENST00000606534 107 ntBASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 MIR376B-201ENST00000614515 100 ntBASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NKX2-3Q8TAU0 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 SNORD115-27-201ENST00000364430 82 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-1163P-201ENST00000364516 107 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 SNORA80E-201ENST00000384744 137 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 MIR519C-201ENST00000385053 87 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 AC069257.2-201ENST00000441819 155 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 AC090255.1-201ENST00000495779 349 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 RNU6-523P-201ENST00000516304 54 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 RNU1-142P-201ENST00000516682 145 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 SCARNA11.3-201ENST00000517276 130 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 AL353149.1-201ENST00000610667 244 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 AC091152.2-201ENST00000591628 2569 ntBASIC3.78□□□□□ -1.8
NKX2-3Q8TAU0 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.81
NKX2-3Q8TAU0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
NKX2-3Q8TAU0 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC3.77□□□□□ -1.81
NKX2-3Q8TAU0 MIR340-201ENST00000362125 95 ntBASIC3.77□□□□□ -1.81
NKX2-3Q8TAU0 Y_RNA.140-201ENST00000363474 103 ntBASIC3.77□□□□□ -1.81
NKX2-3Q8TAU0 Y_RNA.171-201ENST00000363760 102 ntBASIC3.77□□□□□ -1.81
NKX2-3Q8TAU0 RNU6-1319P-201ENST00000390855 104 ntBASIC3.77□□□□□ -1.81
NKX2-3Q8TAU0 RNU6-747P-201ENST00000390928 104 ntBASIC3.77□□□□□ -1.81
NKX2-3Q8TAU0 RNU6-241P-201ENST00000391148 104 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms