Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
TRIM35Q9UPQ4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
TRIM35Q9UPQ4 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 CEP170P1-201ENST00000502249 4587 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 SNORA63.2-201ENST00000362603 126 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 RNU6-546P-201ENST00000383991 107 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 RNU6-424P-201ENST00000384367 105 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 SNORA8-201ENST00000384574 139 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 RNVU1-14-201ENST00000384770 164 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 AC017083.1-201ENST00000428093 483 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 AC009969.1-201ENST00000438726 172 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 CYCSP35-201ENST00000451978 304 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 RNU6-70P-201ENST00000516438 60 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 Y_RNA.681-201ENST00000516445 113 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 MIR2114-201ENST00000516645 80 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 RNU6-826P-201ENST00000516827 104 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 MIR2276-201ENST00000516886 89 ntBASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM35Q9UPQ4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TRIM35Q9UPQ4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
TRIM35Q9UPQ4 MIR7-3-201ENST00000384898 110 ntBASIC4.44□□□□□ -1.7
TRIM35Q9UPQ4 RN7SKP192-201ENST00000411291 327 ntBASIC4.44□□□□□ -1.7
TRIM35Q9UPQ4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
TRIM35Q9UPQ4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 AL355596.1-201ENST00000565399 3996 ntBASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 AL442644.1-201ENST00000454390 3105 ntBASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 RNU6-865P-201ENST00000364772 107 ntBASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 SNORD30.1-201ENST00000391309 70 ntBASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 RNU2-63P-201ENST00000410792 194 ntBASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 DNAJC19P9-201ENST00000555084 351 ntBASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
TRIM35Q9UPQ4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC4.42□□□□□ -1.7
TRIM35Q9UPQ4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM35Q9UPQ4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
TRIM35Q9UPQ4 RNA5SP167-201ENST00000365461 116 ntBASIC4.42□□□□□ -1.7
TRIM35Q9UPQ4 RNU6-991P-201ENST00000516168 107 ntBASIC4.42□□□□□ -1.7
TRIM35Q9UPQ4 SNORA70.19-201ENST00000516717 90 ntBASIC4.42□□□□□ -1.7
TRIM35Q9UPQ4 RNU7-181P-201ENST00000517234 74 ntBASIC4.42□□□□□ -1.7
TRIM35Q9UPQ4 U6.111-201ENST00000636093 83 ntBASIC4.42□□□□□ -1.7
TRIM35Q9UPQ4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 SNORA70.7-201ENST00000384159 133 ntBASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 AC005326.1-201ENST00000429197 123 ntBASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 Y_RNA.660-201ENST00000516002 120 ntBASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 RNU7-53P-201ENST00000516705 60 ntBASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 AC012676.2-201ENST00000619258 186 ntBASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 MIR6717-201ENST00000622747 73 ntBASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM35Q9UPQ4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
TRIM35Q9UPQ4 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
TRIM35Q9UPQ4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
TRIM35Q9UPQ4 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
TRIM35Q9UPQ4 MIR30E-201ENST00000362104 92 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 RNU1-70P-201ENST00000362618 164 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 SNORD38.2-201ENST00000384470 69 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 MIR515-2-201ENST00000384883 83 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 MIR515-1-201ENST00000384884 83 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 SNORD4B-201ENST00000459083 72 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 SNORA31.1-201ENST00000515993 133 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 SNORA31.5-201ENST00000516190 133 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 RNU7-28P-201ENST00000516759 62 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 RNU6-807P-201ENST00000516805 107 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 SNORA31.21-201ENST00000517180 77 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 AC024995.1-201ENST00000523014 93 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 FAM106DP-201ENST00000586416 501 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 MAPK10-373ENST00000641983 6772 ntBASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
TRIM35Q9UPQ4 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.39□□□□□ -1.71
TRIM35Q9UPQ4 SNORA70.4-201ENST00000365509 134 ntBASIC4.39□□□□□ -1.71
TRIM35Q9UPQ4 Y_RNA.448-201ENST00000384185 108 ntBASIC4.39□□□□□ -1.71
TRIM35Q9UPQ4 RNU6-540P-201ENST00000384622 101 ntBASIC4.39□□□□□ -1.71
TRIM35Q9UPQ4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC4.39□□□□□ -1.71
TRIM35Q9UPQ4 AC234781.5-201ENST00000508429 271 ntBASIC4.39□□□□□ -1.71
TRIM35Q9UPQ4 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.39□□□□□ -1.71
TRIM35Q9UPQ4 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
TRIM35Q9UPQ4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.39□□□□□ -1.71
TRIM35Q9UPQ4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRIM35Q9UPQ4 RNU6-161P-201ENST00000363051 106 ntBASIC4.38□□□□□ -1.71
TRIM35Q9UPQ4 SNORA25.9-201ENST00000365087 128 ntBASIC4.38□□□□□ -1.71
TRIM35Q9UPQ4 RNU6-499P-201ENST00000365615 107 ntBASIC4.38□□□□□ -1.71
TRIM35Q9UPQ4 Y_RNA.532-201ENST00000384590 113 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 333 ms