Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 AL138721.1-201ENST00000616756 179 ntBASIC6.36□□□□□ -1.39
SENP3Q9H4L4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SENP3Q9H4L4 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC6.36□□□□□ -1.39
SENP3Q9H4L4 RNU4-33P-201ENST00000364316 85 ntBASIC6.35□□□□□ -1.39
SENP3Q9H4L4 SNORA25B-201ENST00000365507 128 ntBASIC6.35□□□□□ -1.39
SENP3Q9H4L4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC6.35□□□□□ -1.39
SENP3Q9H4L4 CYCSP40-201ENST00000575927 294 ntBASIC6.35□□□□□ -1.39
SENP3Q9H4L4 AC103810.8-201ENST00000607347 118 ntBASIC6.35□□□□□ -1.39
SENP3Q9H4L4 AL513423.1-201ENST00000621695 132 ntBASIC6.35□□□□□ -1.39
SENP3Q9H4L4 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC6.35□□□□□ -1.39
SENP3Q9H4L4 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
SENP3Q9H4L4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
SENP3Q9H4L4 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SENP3Q9H4L4 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC6.34□□□□□ -1.39
SENP3Q9H4L4 AL139132.1-201ENST00000431587 344 ntBASIC6.34□□□□□ -1.39
SENP3Q9H4L4 AC008885.1-201ENST00000514930 301 ntBASIC6.34□□□□□ -1.39
SENP3Q9H4L4 RNA5SP49-201ENST00000516450 115 ntBASIC6.34□□□□□ -1.39
SENP3Q9H4L4 RNA5SP519-201ENST00000516480 119 ntBASIC6.34□□□□□ -1.39
SENP3Q9H4L4 MIR548V-201ENST00000584165 80 ntBASIC6.34□□□□□ -1.39
SENP3Q9H4L4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC6.34□□□□□ -1.39
SENP3Q9H4L4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
SENP3Q9H4L4 U8.13-201ENST00000390842 128 ntBASIC6.33□□□□□ -1.4
SENP3Q9H4L4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
SENP3Q9H4L4 RPL23AP94-201ENST00000512518 302 ntBASIC6.33□□□□□ -1.4
SENP3Q9H4L4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SENP3Q9H4L4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SENP3Q9H4L4 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3Q9H4L4 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3Q9H4L4 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3Q9H4L4 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.32□□□□□ -1.4
SENP3Q9H4L4 MIR30D-201ENST00000362283 70 ntBASIC6.32□□□□□ -1.4
SENP3Q9H4L4 COX5BP7-201ENST00000414780 274 ntBASIC6.32□□□□□ -1.4
SENP3Q9H4L4 AL121772.2-201ENST00000614331 297 ntBASIC6.32□□□□□ -1.4
SENP3Q9H4L4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC6.32□□□□□ -1.4
SENP3Q9H4L4 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.32□□□□□ -1.4
SENP3Q9H4L4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3Q9H4L4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
SENP3Q9H4L4 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
SENP3Q9H4L4 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SENP3Q9H4L4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
SENP3Q9H4L4 MIR6509-201ENST00000614603 85 ntBASIC6.31□□□□□ -1.4
SENP3Q9H4L4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SENP3Q9H4L4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SENP3Q9H4L4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
SENP3Q9H4L4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SENP3Q9H4L4 CPHL1P-201ENST00000461341 3407 ntBASIC6.31□□□□□ -1.4
SENP3Q9H4L4 AC011753.1-201ENST00000451001 220 ntBASIC6.3□□□□□ -1.4
SENP3Q9H4L4 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC6.3□□□□□ -1.4
SENP3Q9H4L4 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SENP3Q9H4L4 RNU6-1039P-201ENST00000383931 107 ntBASIC6.29□□□□□ -1.4
SENP3Q9H4L4 MIR203A-201ENST00000384836 110 ntBASIC6.29□□□□□ -1.4
SENP3Q9H4L4 SCARNA16.3-201ENST00000516595 184 ntBASIC6.29□□□□□ -1.4
SENP3Q9H4L4 MIR5094-201ENST00000578766 85 ntBASIC6.29□□□□□ -1.4
SENP3Q9H4L4 RNU7-10P-201ENST00000607194 63 ntBASIC6.29□□□□□ -1.4
SENP3Q9H4L4 MIR6740-201ENST00000618268 113 ntBASIC6.29□□□□□ -1.4
SENP3Q9H4L4 MIR6891-201ENST00000618788 93 ntBASIC6.29□□□□□ -1.4
SENP3Q9H4L4 MIR8059-201ENST00000620427 81 ntBASIC6.29□□□□□ -1.4
SENP3Q9H4L4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC6.29□□□□□ -1.4
SENP3Q9H4L4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SENP3Q9H4L4 Z95114.1-201ENST00000624264 14574 ntBASIC6.29□□□□□ -1.4
SENP3Q9H4L4 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SENP3Q9H4L4 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SENP3Q9H4L4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3Q9H4L4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC6.28□□□□□ -1.4
SENP3Q9H4L4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3Q9H4L4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3Q9H4L4 AL031595.2-201ENST00000624215 19071 ntBASIC6.28□□□□□ -1.4
SENP3Q9H4L4 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC6.28□□□□□ -1.4
SENP3Q9H4L4 RN7SL691P-201ENST00000494487 301 ntBASIC6.28□□□□□ -1.4
SENP3Q9H4L4 AC005786.1-201ENST00000588553 154 ntBASIC6.28□□□□□ -1.4
SENP3Q9H4L4 AC021506.2-201ENST00000612354 169 ntBASIC6.28□□□□□ -1.4
SENP3Q9H4L4 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC6.28□□□□□ -1.4
SENP3Q9H4L4 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
SENP3Q9H4L4 AC016717.2-201ENST00000609089 5141 ntBASIC6.28□□□□□ -1.4
SENP3Q9H4L4 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
SENP3Q9H4L4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC6.28□□□□□ -1.4
SENP3Q9H4L4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.4
SENP3Q9H4L4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
SENP3Q9H4L4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
SENP3Q9H4L4 RNU6-1054P-201ENST00000411293 104 ntBASIC6.27□□□□□ -1.41
SENP3Q9H4L4 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SENP3Q9H4L4 MIR5685-201ENST00000579080 79 ntBASIC6.27□□□□□ -1.41
SENP3Q9H4L4 MIR548H5-201ENST00000580314 60 ntBASIC6.27□□□□□ -1.41
SENP3Q9H4L4 AC019176.2-201ENST00000611579 315 ntBASIC6.27□□□□□ -1.41
SENP3Q9H4L4 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
SENP3Q9H4L4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SENP3Q9H4L4 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SENP3Q9H4L4 MIR101-2-201ENST00000362195 79 ntBASIC6.26□□□□□ -1.41
SENP3Q9H4L4 RNA5SP119-201ENST00000362715 117 ntBASIC6.26□□□□□ -1.41
SENP3Q9H4L4 SNORD75.2-201ENST00000408784 58 ntBASIC6.26□□□□□ -1.41
SENP3Q9H4L4 AC023141.11-201ENST00000508864 202 ntBASIC6.26□□□□□ -1.41
SENP3Q9H4L4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC6.26□□□□□ -1.41
SENP3Q9H4L4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC6.26□□□□□ -1.41
SENP3Q9H4L4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SENP3Q9H4L4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
SENP3Q9H4L4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
SENP3Q9H4L4 AL022322.2-201ENST00000624072 20397 ntBASIC6.26□□□□□ -1.41
SENP3Q9H4L4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SENP3Q9H4L4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SENP3Q9H4L4 ZNF355P-201ENST00000427301 3216 ntBASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms