Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AL591926.4-201ENST00000616895 298 ntBASIC1.87□□□□□ -2.11
SOX2P48431 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SOX2P48431 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SOX2P48431 MIR126-201ENST00000362291 85 ntBASIC1.86□□□□□ -2.11
SOX2P48431 Y_RNA.180-201ENST00000363867 113 ntBASIC1.86□□□□□ -2.11
SOX2P48431 RNU6-275P-201ENST00000364910 107 ntBASIC1.86□□□□□ -2.11
SOX2P48431 RNA5SP138-201ENST00000365098 114 ntBASIC1.86□□□□□ -2.11
SOX2P48431 RNU4-52P-201ENST00000384209 138 ntBASIC1.86□□□□□ -2.11
SOX2P48431 RNU6-301P-201ENST00000384277 107 ntBASIC1.86□□□□□ -2.11
SOX2P48431 RNU6-296P-201ENST00000384608 107 ntBASIC1.86□□□□□ -2.11
SOX2P48431 Y_RNA.587-201ENST00000391210 103 ntBASIC1.86□□□□□ -2.11
SOX2P48431 RN7SKP200-201ENST00000410564 320 ntBASIC1.86□□□□□ -2.11
SOX2P48431 RN7SKP51-201ENST00000410781 304 ntBASIC1.86□□□□□ -2.11
SOX2P48431 SNORD11-201ENST00000459124 84 ntBASIC1.86□□□□□ -2.11
SOX2P48431 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.86□□□□□ -2.11
SOX2P48431 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.86□□□□□ -2.11
SOX2P48431 MIR4435-1-201ENST00000582552 80 ntBASIC1.86□□□□□ -2.11
SOX2P48431 SNORA28-201ENST00000606769 126 ntBASIC1.86□□□□□ -2.11
SOX2P48431 uc_338.4-201ENST00000616635 176 ntBASIC1.86□□□□□ -2.11
SOX2P48431 Y_RNA.23-201ENST00000362496 106 ntBASIC1.85□□□□□ -2.11
SOX2P48431 SNORD68-201ENST00000363214 84 ntBASIC1.85□□□□□ -2.11
SOX2P48431 RNU6-312P-201ENST00000364629 107 ntBASIC1.85□□□□□ -2.11
SOX2P48431 RNU6-728P-201ENST00000365375 104 ntBASIC1.85□□□□□ -2.11
SOX2P48431 PCNPP3-201ENST00000393579 471 ntBASIC1.85□□□□□ -2.11
SOX2P48431 RNU2-40P-201ENST00000410833 196 ntBASIC1.85□□□□□ -2.11
SOX2P48431 RNA5SP100-201ENST00000410903 110 ntBASIC1.85□□□□□ -2.11
SOX2P48431 RNA5SP59-201ENST00000410922 110 ntBASIC1.85□□□□□ -2.11
SOX2P48431 MLLT10P1-201ENST00000418346 262 ntBASIC1.85□□□□□ -2.11
SOX2P48431 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.85□□□□□ -2.11
SOX2P48431 STAG3L5P-204ENST00000443759 179 ntBASIC1.85□□□□□ -2.11
SOX2P48431 RPL23AP63-201ENST00000498752 471 ntBASIC1.85□□□□□ -2.11
SOX2P48431 RNA5SP200-201ENST00000516360 103 ntBASIC1.85□□□□□ -2.11
SOX2P48431 RNA5SP481-201ENST00000516814 122 ntBASIC1.85□□□□□ -2.11
SOX2P48431 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.85□□□□□ -2.11
SOX2P48431 AC109810.1-201ENST00000534066 224 ntBASIC1.85□□□□□ -2.11
SOX2P48431 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.85□□□□□ -2.11
SOX2P48431 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.85□□□□□ -2.11
SOX2P48431 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
SOX2P48431 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.84□□□□□ -2.11
SOX2P48431 AL136360.1-201ENST00000503377 1900 ntBASIC1.84□□□□□ -2.11
SOX2P48431 RNA5SP289-201ENST00000362332 137 ntBASIC1.84□□□□□ -2.11
SOX2P48431 SNORA48.3-201ENST00000391081 134 ntBASIC1.84□□□□□ -2.11
SOX2P48431 RNU6-131P-201ENST00000391144 107 ntBASIC1.84□□□□□ -2.11
SOX2P48431 AL121914.1-201ENST00000450188 156 ntBASIC1.84□□□□□ -2.11
SOX2P48431 RNA5SP57-201ENST00000459463 123 ntBASIC1.84□□□□□ -2.11
SOX2P48431 AC074198.2-201ENST00000508153 258 ntBASIC1.84□□□□□ -2.11
SOX2P48431 SNORA31.10-201ENST00000516482 106 ntBASIC1.84□□□□□ -2.11
SOX2P48431 RNA5SP437-201ENST00000517249 129 ntBASIC1.84□□□□□ -2.11
SOX2P48431 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.84□□□□□ -2.11
SOX2P48431 AC091544.4-201ENST00000555268 342 ntBASIC1.84□□□□□ -2.11
SOX2P48431 MIR4287-201ENST00000579398 78 ntBASIC1.84□□□□□ -2.11
SOX2P48431 ZNF702P-202ENST00000434269 1966 ntBASIC1.84□□□□□ -2.11
SOX2P48431 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.84□□□□□ -2.12
SOX2P48431 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
SOX2P48431 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
SOX2P48431 RNA5SP276-201ENST00000362580 94 ntBASIC1.83□□□□□ -2.12
SOX2P48431 SNORA4.2-201ENST00000365313 147 ntBASIC1.83□□□□□ -2.12
SOX2P48431 MIR522-201ENST00000385071 87 ntBASIC1.83□□□□□ -2.12
SOX2P48431 MIR676-201ENST00000390702 67 ntBASIC1.83□□□□□ -2.12
SOX2P48431 SNORA12.1-201ENST00000390873 148 ntBASIC1.83□□□□□ -2.12
SOX2P48431 AL034345.1-201ENST00000407768 123 ntBASIC1.83□□□□□ -2.12
SOX2P48431 Y_RNA.622-201ENST00000411091 108 ntBASIC1.83□□□□□ -2.12
SOX2P48431 RNU2-55P-201ENST00000411146 174 ntBASIC1.83□□□□□ -2.12
SOX2P48431 AL158823.1-201ENST00000418441 478 ntBASIC1.83□□□□□ -2.12
SOX2P48431 FTH1P12-201ENST00000432137 551 ntBASIC1.83□□□□□ -2.12
SOX2P48431 HSPE1P9-201ENST00000440046 311 ntBASIC1.83□□□□□ -2.12
SOX2P48431 RNA5SP233-201ENST00000459153 113 ntBASIC1.83□□□□□ -2.12
SOX2P48431 SCARNA16.3-201ENST00000516595 184 ntBASIC1.83□□□□□ -2.12
SOX2P48431 RNA5SP364-201ENST00000516938 78 ntBASIC1.83□□□□□ -2.12
SOX2P48431 AC087685.1-201ENST00000587507 141 ntBASIC1.83□□□□□ -2.12
SOX2P48431 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.83□□□□□ -2.12
SOX2P48431 AC008555.8-201ENST00000623602 2168 ntBASIC1.82□□□□□ -2.12
SOX2P48431 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.82□□□□□ -2.12
SOX2P48431 Y_RNA.242-201ENST00000364473 110 ntBASIC1.82□□□□□ -2.12
SOX2P48431 Y_RNA.357-201ENST00000365487 109 ntBASIC1.82□□□□□ -2.12
SOX2P48431 MIR15B-201ENST00000385045 98 ntBASIC1.82□□□□□ -2.12
SOX2P48431 SNORA79-201ENST00000408376 140 ntBASIC1.82□□□□□ -2.12
SOX2P48431 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.82□□□□□ -2.12
SOX2P48431 KRTAP19-11P-201ENST00000439851 104 ntBASIC1.82□□□□□ -2.12
SOX2P48431 snoU13.27-201ENST00000459278 104 ntBASIC1.82□□□□□ -2.12
SOX2P48431 RNU7-34P-201ENST00000459394 64 ntBASIC1.82□□□□□ -2.12
SOX2P48431 NDUFA4P2-201ENST00000489989 244 ntBASIC1.82□□□□□ -2.12
SOX2P48431 OR9P1P-201ENST00000496431 281 ntBASIC1.82□□□□□ -2.12
SOX2P48431 SNORD77.4-201ENST00000516158 81 ntBASIC1.82□□□□□ -2.12
SOX2P48431 MIR4709-201ENST00000577272 72 ntBASIC1.82□□□□□ -2.12
SOX2P48431 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SOX2P48431 U8.5-201ENST00000364528 136 ntBASIC1.81□□□□□ -2.12
SOX2P48431 Y_RNA.464-201ENST00000384282 110 ntBASIC1.81□□□□□ -2.12
SOX2P48431 HMGN2P38-201ENST00000423806 265 ntBASIC1.81□□□□□ -2.12
SOX2P48431 SEPT7P4-201ENST00000437076 306 ntBASIC1.81□□□□□ -2.12
SOX2P48431 AC079804.2-201ENST00000490376 200 ntBASIC1.81□□□□□ -2.12
SOX2P48431 AC005840.1-201ENST00000498412 377 ntBASIC1.81□□□□□ -2.12
SOX2P48431 RNU6-1299P-201ENST00000516316 100 ntBASIC1.81□□□□□ -2.12
SOX2P48431 RNU6-126P-201ENST00000516685 103 ntBASIC1.81□□□□□ -2.12
SOX2P48431 RNU7-149P-201ENST00000516739 59 ntBASIC1.81□□□□□ -2.12
SOX2P48431 SNORA31.17-201ENST00000516953 127 ntBASIC1.81□□□□□ -2.12
SOX2P48431 MIR4662B-201ENST00000579498 81 ntBASIC1.81□□□□□ -2.12
SOX2P48431 MIR4431-201ENST00000579990 94 ntBASIC1.81□□□□□ -2.12
SOX2P48431 MIR4762-201ENST00000585261 75 ntBASIC1.81□□□□□ -2.12
SOX2P48431 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms