Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SNORA70.19-201ENST00000516717 90 ntBASIC3.19□□□□□ -1.9
MSX1P28360 AC004812.1-201ENST00000540773 146 ntBASIC3.19□□□□□ -1.9
MSX1P28360 MIR3202-2-201ENST00000635980 79 ntBASIC3.19□□□□□ -1.9
MSX1P28360 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.19□□□□□ -1.9
MSX1P28360 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.19□□□□□ -1.9
MSX1P28360 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
MSX1P28360 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
MSX1P28360 RNU6-862P-201ENST00000362804 105 ntBASIC3.18□□□□□ -1.9
MSX1P28360 RNU6-832P-201ENST00000363319 107 ntBASIC3.18□□□□□ -1.9
MSX1P28360 SNORA4.2-201ENST00000365313 147 ntBASIC3.18□□□□□ -1.9
MSX1P28360 Y_RNA.360-201ENST00000365512 102 ntBASIC3.18□□□□□ -1.9
MSX1P28360 SNORA27-201ENST00000384323 126 ntBASIC3.18□□□□□ -1.9
MSX1P28360 SNORD38C-201ENST00000384381 69 ntBASIC3.18□□□□□ -1.9
MSX1P28360 RNU6-160P-201ENST00000384591 107 ntBASIC3.18□□□□□ -1.9
MSX1P28360 MIR577-201ENST00000385196 96 ntBASIC3.18□□□□□ -1.9
MSX1P28360 SNORA48.2-201ENST00000390926 124 ntBASIC3.18□□□□□ -1.9
MSX1P28360 RNU1-101P-201ENST00000391171 127 ntBASIC3.18□□□□□ -1.9
MSX1P28360 RNU6-733P-201ENST00000410759 104 ntBASIC3.18□□□□□ -1.9
MSX1P28360 AL022718.1-201ENST00000412004 84 ntBASIC3.18□□□□□ -1.9
MSX1P28360 AL512326.2-201ENST00000426359 151 ntBASIC3.18□□□□□ -1.9
MSX1P28360 AC005326.1-201ENST00000429197 123 ntBASIC3.18□□□□□ -1.9
MSX1P28360 AC022137.1-201ENST00000483735 151 ntBASIC3.18□□□□□ -1.9
MSX1P28360 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.18□□□□□ -1.9
MSX1P28360 AC022254.1-201ENST00000567857 235 ntBASIC3.18□□□□□ -1.9
MSX1P28360 IGLL4P-201ENST00000614590 133 ntBASIC3.18□□□□□ -1.9
MSX1P28360 AC012531.4-201ENST00000616509 177 ntBASIC3.18□□□□□ -1.9
MSX1P28360 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.18□□□□□ -1.9
MSX1P28360 FAS-AS1.2-201ENST00000620386 170 ntBASIC3.18□□□□□ -1.9
MSX1P28360 AC022149.2-201ENST00000621061 203 ntBASIC3.18□□□□□ -1.9
MSX1P28360 U4.6-201ENST00000621618 127 ntBASIC3.18□□□□□ -1.9
MSX1P28360 MIR203B-201ENST00000636080 86 ntBASIC3.18□□□□□ -1.9
MSX1P28360 MIR1255B1-201ENST00000636325 63 ntBASIC3.18□□□□□ -1.9
MSX1P28360 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
MSX1P28360 AC245060.5-201ENST00000610778 3293 ntBASIC3.18□□□□□ -1.9
MSX1P28360 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
MSX1P28360 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
MSX1P28360 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.17□□□□□ -1.9
MSX1P28360 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.17□□□□□ -1.9
MSX1P28360 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
MSX1P28360 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
MSX1P28360 RNU6-170P-201ENST00000362832 104 ntBASIC3.17□□□□□ -1.9
MSX1P28360 RNU6-409P-201ENST00000384114 104 ntBASIC3.17□□□□□ -1.9
MSX1P28360 RNU6-644P-201ENST00000391155 98 ntBASIC3.17□□□□□ -1.9
MSX1P28360 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.17□□□□□ -1.9
MSX1P28360 AL445687.1-201ENST00000439946 251 ntBASIC3.17□□□□□ -1.9
MSX1P28360 AC115115.1-201ENST00000449927 248 ntBASIC3.17□□□□□ -1.9
MSX1P28360 RNU6-795P-201ENST00000516323 103 ntBASIC3.17□□□□□ -1.9
MSX1P28360 SNORA70.18-201ENST00000516696 98 ntBASIC3.17□□□□□ -1.9
MSX1P28360 AC007536.1-201ENST00000533382 349 ntBASIC3.17□□□□□ -1.9
MSX1P28360 Y_RNA.773-201ENST00000607168 90 ntBASIC3.17□□□□□ -1.9
MSX1P28360 U7.3-201ENST00000616123 62 ntBASIC3.17□□□□□ -1.9
MSX1P28360 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
MSX1P28360 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
MSX1P28360 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
MSX1P28360 SNORA38.1-201ENST00000364172 131 ntBASIC3.16□□□□□ -1.9
MSX1P28360 RNU4-67P-201ENST00000364569 141 ntBASIC3.16□□□□□ -1.9
MSX1P28360 SNORA25B-201ENST00000365507 128 ntBASIC3.16□□□□□ -1.9
MSX1P28360 RNU6-1072P-201ENST00000384703 107 ntBASIC3.16□□□□□ -1.9
MSX1P28360 RNU6-443P-201ENST00000384780 107 ntBASIC3.16□□□□□ -1.9
MSX1P28360 MIR128-1-201ENST00000384921 82 ntBASIC3.16□□□□□ -1.9
MSX1P28360 RNA5SP225-201ENST00000410874 135 ntBASIC3.16□□□□□ -1.9
MSX1P28360 AC245047.3-201ENST00000429428 127 ntBASIC3.16□□□□□ -1.9
MSX1P28360 RPS29P31-201ENST00000446147 164 ntBASIC3.16□□□□□ -1.9
MSX1P28360 RPL39P39-201ENST00000455840 151 ntBASIC3.16□□□□□ -1.9
MSX1P28360 RNU7-96P-201ENST00000459535 64 ntBASIC3.16□□□□□ -1.9
MSX1P28360 RNU6-998P-201ENST00000515894 101 ntBASIC3.16□□□□□ -1.9
MSX1P28360 RNU2-13P-201ENST00000515909 113 ntBASIC3.16□□□□□ -1.9
MSX1P28360 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.16□□□□□ -1.9
MSX1P28360 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
MSX1P28360 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
MSX1P28360 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
MSX1P28360 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.15□□□□□ -1.9
MSX1P28360 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
MSX1P28360 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
MSX1P28360 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
MSX1P28360 AC017071.1-201ENST00000564407 2204 ntBASIC3.15□□□□□ -1.9
MSX1P28360 Y_RNA.241-201ENST00000364470 117 ntBASIC3.15□□□□□ -1.91
MSX1P28360 SNORA31.4-201ENST00000516049 129 ntBASIC3.15□□□□□ -1.91
MSX1P28360 RNU6-162P-201ENST00000516228 103 ntBASIC3.15□□□□□ -1.91
MSX1P28360 RNA5SP395-201ENST00000516567 118 ntBASIC3.15□□□□□ -1.91
MSX1P28360 AL513534.2-201ENST00000603836 250 ntBASIC3.15□□□□□ -1.91
MSX1P28360 uc_338.25-201ENST00000613756 156 ntBASIC3.15□□□□□ -1.91
MSX1P28360 AC021613.1-201ENST00000623880 111 ntBASIC3.15□□□□□ -1.91
MSX1P28360 AC095038.3-201ENST00000634439 195 ntBASIC3.15□□□□□ -1.91
MSX1P28360 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.15□□□□□ -1.91
MSX1P28360 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.15□□□□□ -1.91
MSX1P28360 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
MSX1P28360 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
MSX1P28360 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
MSX1P28360 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
MSX1P28360 Z83843.1-201ENST00000604070 3685 ntBASIC3.15□□□□□ -1.91
MSX1P28360 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSX1P28360 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
MSX1P28360 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSX1P28360 RNU4-35P-201ENST00000362588 141 ntBASIC3.14□□□□□ -1.91
MSX1P28360 Y_RNA.299-201ENST00000364973 94 ntBASIC3.14□□□□□ -1.91
MSX1P28360 RNU6-242P-201ENST00000384359 107 ntBASIC3.14□□□□□ -1.91
MSX1P28360 AL451046.2-201ENST00000403074 277 ntBASIC3.14□□□□□ -1.91
MSX1P28360 MIR1255A-201ENST00000408338 113 ntBASIC3.14□□□□□ -1.91
MSX1P28360 AC003685.2-201ENST00000422795 395 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms