Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AL353149.1-201ENST00000610667 244 ntBASIC1.87□□□□□ -2.11
LDB3O75112 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.87□□□□□ -2.11
LDB3O75112 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
LDB3O75112 MIR367-201ENST00000362299 68 ntBASIC1.86□□□□□ -2.11
LDB3O75112 RNU6-103P-201ENST00000363686 107 ntBASIC1.86□□□□□ -2.11
LDB3O75112 RNU6-271P-201ENST00000363858 105 ntBASIC1.86□□□□□ -2.11
LDB3O75112 Y_RNA.357-201ENST00000365487 109 ntBASIC1.86□□□□□ -2.11
LDB3O75112 RNU6-1336P-201ENST00000383886 109 ntBASIC1.86□□□□□ -2.11
LDB3O75112 Y_RNA.488-201ENST00000384403 102 ntBASIC1.86□□□□□ -2.11
LDB3O75112 Y_RNA.497-201ENST00000384447 98 ntBASIC1.86□□□□□ -2.11
LDB3O75112 MIR15B-201ENST00000385045 98 ntBASIC1.86□□□□□ -2.11
LDB3O75112 RNU11-3P-201ENST00000391111 133 ntBASIC1.86□□□□□ -2.11
LDB3O75112 Y_RNA.586-201ENST00000391146 98 ntBASIC1.86□□□□□ -2.11
LDB3O75112 AL512604.1-201ENST00000404812 257 ntBASIC1.86□□□□□ -2.11
LDB3O75112 RNU6-257P-201ENST00000410238 98 ntBASIC1.86□□□□□ -2.11
LDB3O75112 HMGN2P3-201ENST00000433603 273 ntBASIC1.86□□□□□ -2.11
LDB3O75112 HMGN2P5-201ENST00000436882 273 ntBASIC1.86□□□□□ -2.11
LDB3O75112 AL121914.1-201ENST00000450188 156 ntBASIC1.86□□□□□ -2.11
LDB3O75112 AC079804.2-201ENST00000490376 200 ntBASIC1.86□□□□□ -2.11
LDB3O75112 RPL23AP54-201ENST00000495129 419 ntBASIC1.86□□□□□ -2.11
LDB3O75112 AC005840.1-201ENST00000498412 377 ntBASIC1.86□□□□□ -2.11
LDB3O75112 AC097462.1-201ENST00000514125 324 ntBASIC1.86□□□□□ -2.11
LDB3O75112 RNU6-1041P-201ENST00000516254 102 ntBASIC1.86□□□□□ -2.11
LDB3O75112 RNU7-128P-201ENST00000517247 62 ntBASIC1.86□□□□□ -2.11
LDB3O75112 MIR4438-201ENST00000585271 93 ntBASIC1.86□□□□□ -2.11
LDB3O75112 MIR6840-201ENST00000611937 71 ntBASIC1.86□□□□□ -2.11
LDB3O75112 AL391903.3-201ENST00000612158 163 ntBASIC1.86□□□□□ -2.11
LDB3O75112 MTND1P7-201ENST00000632801 297 ntBASIC1.86□□□□□ -2.11
LDB3O75112 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
LDB3O75112 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
LDB3O75112 CENPCP1-201ENST00000533085 2578 ntBASIC1.86□□□□□ -2.11
LDB3O75112 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
LDB3O75112 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
LDB3O75112 Y_RNA.291-201ENST00000364886 113 ntBASIC1.85□□□□□ -2.11
LDB3O75112 RNA5SP138-201ENST00000365098 114 ntBASIC1.85□□□□□ -2.11
LDB3O75112 RNU6-144P-201ENST00000383951 107 ntBASIC1.85□□□□□ -2.11
LDB3O75112 RNU6-1228P-201ENST00000391014 107 ntBASIC1.85□□□□□ -2.11
LDB3O75112 AL356379.1-201ENST00000414105 126 ntBASIC1.85□□□□□ -2.11
LDB3O75112 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.85□□□□□ -2.11
LDB3O75112 HMGN2P34-201ENST00000437647 269 ntBASIC1.85□□□□□ -2.11
LDB3O75112 SNRPGP8-201ENST00000454064 226 ntBASIC1.85□□□□□ -2.11
LDB3O75112 RNU6-437P-201ENST00000459408 95 ntBASIC1.85□□□□□ -2.11
LDB3O75112 SNORA25.12-201ENST00000516202 82 ntBASIC1.85□□□□□ -2.11
LDB3O75112 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.85□□□□□ -2.11
LDB3O75112 MIR4287-201ENST00000579398 78 ntBASIC1.85□□□□□ -2.11
LDB3O75112 MIR4298-201ENST00000584380 73 ntBASIC1.85□□□□□ -2.11
LDB3O75112 AC005786.1-201ENST00000588553 154 ntBASIC1.85□□□□□ -2.11
LDB3O75112 AL021707.8-201ENST00000609428 183 ntBASIC1.85□□□□□ -2.11
LDB3O75112 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.85□□□□□ -2.11
LDB3O75112 U6.108-201ENST00000637764 58 ntBASIC1.85□□□□□ -2.11
LDB3O75112 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LDB3O75112 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LDB3O75112 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.84□□□□□ -2.11
LDB3O75112 snoU2-30.2-201ENST00000362805 70 ntBASIC1.84□□□□□ -2.11
LDB3O75112 SNORD45.3-201ENST00000363836 72 ntBASIC1.84□□□□□ -2.11
LDB3O75112 RNU6-768P-201ENST00000384683 107 ntBASIC1.84□□□□□ -2.11
LDB3O75112 RNU6-417P-201ENST00000384712 107 ntBASIC1.84□□□□□ -2.11
LDB3O75112 RNA5SP467-201ENST00000391274 118 ntBASIC1.84□□□□□ -2.11
LDB3O75112 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
LDB3O75112 RPL36AP21-201ENST00000490372 323 ntBASIC1.84□□□□□ -2.11
LDB3O75112 AL049861.1-201ENST00000603130 150 ntBASIC1.84□□□□□ -2.11
LDB3O75112 AP001485.1-201ENST00000604799 199 ntBASIC1.84□□□□□ -2.11
LDB3O75112 MIR338-201ENST00000636369 67 ntBASIC1.84□□□□□ -2.11
LDB3O75112 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
LDB3O75112 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
LDB3O75112 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
LDB3O75112 RNA5SP276-201ENST00000362580 94 ntBASIC1.83□□□□□ -2.12
LDB3O75112 RNU6-643P-201ENST00000384018 107 ntBASIC1.83□□□□□ -2.12
LDB3O75112 MIR597-201ENST00000384968 97 ntBASIC1.83□□□□□ -2.12
LDB3O75112 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
LDB3O75112 Y_RNA.587-201ENST00000391210 103 ntBASIC1.83□□□□□ -2.12
LDB3O75112 AC010154.1-201ENST00000425857 269 ntBASIC1.83□□□□□ -2.12
LDB3O75112 RNU7-197P-201ENST00000458836 62 ntBASIC1.83□□□□□ -2.12
LDB3O75112 RPS27P21-201ENST00000486977 252 ntBASIC1.83□□□□□ -2.12
LDB3O75112 AC107027.2-201ENST00000512197 115 ntBASIC1.83□□□□□ -2.12
LDB3O75112 RNU7-172P-201ENST00000517125 64 ntBASIC1.83□□□□□ -2.12
LDB3O75112 U6.73-201ENST00000619194 103 ntBASIC1.83□□□□□ -2.12
LDB3O75112 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.83□□□□□ -2.12
LDB3O75112 AC092881.1-201ENST00000638218 2733 ntBASIC1.82□□□□□ -2.12
LDB3O75112 SNORD114-1-201ENST00000362705 72 ntBASIC1.82□□□□□ -2.12
LDB3O75112 RNU6-674P-201ENST00000363831 107 ntBASIC1.82□□□□□ -2.12
LDB3O75112 RNU4-41P-201ENST00000364426 143 ntBASIC1.82□□□□□ -2.12
LDB3O75112 RNU6-1082P-201ENST00000364574 107 ntBASIC1.82□□□□□ -2.12
LDB3O75112 RNU6-959P-201ENST00000384671 107 ntBASIC1.82□□□□□ -2.12
LDB3O75112 RNU6-460P-201ENST00000391158 108 ntBASIC1.82□□□□□ -2.12
LDB3O75112 AL117342.1-201ENST00000404861 406 ntBASIC1.82□□□□□ -2.12
LDB3O75112 RN7SKP101-201ENST00000411376 320 ntBASIC1.82□□□□□ -2.12
LDB3O75112 AL158823.1-201ENST00000418441 478 ntBASIC1.82□□□□□ -2.12
LDB3O75112 CST2P1-201ENST00000425770 87 ntBASIC1.82□□□□□ -2.12
LDB3O75112 MTND4LP9-201ENST00000427694 174 ntBASIC1.82□□□□□ -2.12
LDB3O75112 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.82□□□□□ -2.12
LDB3O75112 YWHAEP4-201ENST00000505390 198 ntBASIC1.82□□□□□ -2.12
LDB3O75112 MIR548X2-201ENST00000579776 100 ntBASIC1.82□□□□□ -2.12
LDB3O75112 DNAJC19P2-201ENST00000593340 302 ntBASIC1.82□□□□□ -2.12
LDB3O75112 AC073413.2-201ENST00000604332 360 ntBASIC1.82□□□□□ -2.12
LDB3O75112 AL365222.1-201ENST00000614661 98 ntBASIC1.82□□□□□ -2.12
LDB3O75112 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.82□□□□□ -2.12
LDB3O75112 AC131280.1-202ENST00000624067 4211 ntBASIC1.81□□□□□ -2.12
LDB3O75112 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.81□□□□□ -2.12
LDB3O75112 RNU6-862P-201ENST00000362804 105 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms