Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 AC124283.5-201ENST00000624661 1809 ntBASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 AC073210.2-201ENST00000430369 194 ntBASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 AC006970.2-201ENST00000450065 779 ntBASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 RPS2P52-201ENST00000469610 820 ntBASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 MARS-234ENST00000630571 216 ntTSL 5 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 MARS-235ENST00000630803 183 ntTSL 3 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 AC090164.3-201ENST00000610780 2143 ntBASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 AP000997.3-201ENST00000623333 2250 ntBASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHMP1AQ9HD42 AP006587.1-201ENST00000534129 1502 ntBASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 MIPEPP3-201ENST00000412105 444 ntBASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 CDCA4P2-201ENST00000441182 718 ntBASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 IKBKGP1-201ENST00000612193 1073 ntBASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHMP1AQ9HD42 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 SLC29A4P1-201ENST00000398760 971 ntBASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 GLI3-203ENST00000437480 451 ntTSL 2 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 AL121906.2-201ENST00000621597 723 ntBASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.23■□□□□ 0.19
CHMP1AQ9HD42 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms