Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 AP000525.1-201ENST00000608286 694 ntBASIC14.63□□□□□ -0.07
CCDC140Q96MF4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 AC066615.1-201ENST00000640911 628 ntBASIC14.63□□□□□ -0.07
CCDC140Q96MF4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC140Q96MF4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 HEIH-201ENST00000623091 1652 ntBASIC14.62□□□□□ -0.07
CCDC140Q96MF4 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 AP005242.2-201ENST00000580065 1175 ntBASIC14.62□□□□□ -0.07
CCDC140Q96MF4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 GRAMD4P8-201ENST00000605465 1115 ntBASIC14.62□□□□□ -0.07
CCDC140Q96MF4 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 KRT8P32-201ENST00000512863 1461 ntBASIC14.62□□□□□ -0.07
CCDC140Q96MF4 AC079598.2-202ENST00000546624 1451 ntBASIC14.62□□□□□ -0.07
CCDC140Q96MF4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 KRT17P2-201ENST00000300992 1314 ntBASIC14.62□□□□□ -0.07
CCDC140Q96MF4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC140Q96MF4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 Z98044.1-201ENST00000632503 1764 ntBASIC14.61□□□□□ -0.07
CCDC140Q96MF4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC140Q96MF4 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 TBC1D3P2-202ENST00000577902 1649 ntBASIC14.6□□□□□ -0.07
CCDC140Q96MF4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms