Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 HEIH-201ENST00000623091 1652 ntBASIC17.14■□□□□ 0.33
ATG4DQ86TL0 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 ANO7L1-203ENST00000602586 1720 ntBASIC17.14■□□□□ 0.33
ATG4DQ86TL0 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 ECEL1P3-201ENST00000427961 737 ntBASIC17.14■□□□□ 0.33
ATG4DQ86TL0 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 BX088651.1-201ENST00000540551 451 ntBASIC17.14■□□□□ 0.33
ATG4DQ86TL0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 AC073912.3-201ENST00000624414 853 ntBASIC17.14■□□□□ 0.33
ATG4DQ86TL0 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
ATG4DQ86TL0 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 KRT8P32-201ENST00000512863 1461 ntBASIC17.13■□□□□ 0.33
ATG4DQ86TL0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 MIR4785-201ENST00000585005 73 ntBASIC17.13■□□□□ 0.33
ATG4DQ86TL0 AC068587.9-201ENST00000641814 219 ntBASIC17.13■□□□□ 0.33
ATG4DQ86TL0 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
ATG4DQ86TL0 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 DGCR10-201ENST00000609839 495 ntBASIC17.12■□□□□ 0.33
ATG4DQ86TL0 AC026471.5-201ENST00000615068 467 ntBASIC17.12■□□□□ 0.33
ATG4DQ86TL0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 KRT17P2-201ENST00000300992 1314 ntBASIC17.12■□□□□ 0.33
ATG4DQ86TL0 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 AC096733.2-201ENST00000609937 1394 ntBASIC17.12■□□□□ 0.33
ATG4DQ86TL0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.12■□□□□ 0.33
ATG4DQ86TL0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 WIZP1-201ENST00000531444 2299 ntBASIC17.11■□□□□ 0.33
ATG4DQ86TL0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.11■□□□□ 0.33
ATG4DQ86TL0 AC211429.1-201ENST00000415277 523 ntBASIC17.11■□□□□ 0.33
ATG4DQ86TL0 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms